Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4782g00074 | ATGGAGTCTTCTGAACCCGAATCAACTGCAGCTTCGAATTCCAACGAGAACCCCGAACTGGGCTTTCCCTCCGCCTTATCTTTGCCTAGTTCTGATCACGCTTCGGAAACCTCAGATCTTAATCATCAGGCTGAGGTCGATGCAGTTCATGGGGAGTTTCAGAACAAGTTGAGTTTGAAGGATAAGGATGAAGAGGGAGAGACTGTGAACAAAGATTATAAATTTGATGGCAGTGAGGAAGTGTGTGATAAACACGGTGCTGAGGAATCTTATGAGGTAGATGGTTGGGGTGAATATAACGATAATTGGAATGAAAATGAGGACACTAATTGGACTACGAATGTGAACGGGAATGAGAATGATGTGGAAGGTGGAGATTATGATCTAGCAGCCCATGAAGTGGAGAAAAAGGAAGACAGAAGCGGTGGTAGCAACCACCAGTACCCGTTGAGGCCCGATGCAGAAGATTGTGCATTCTATCTGAAAACTGGAACTTGCAAGTTTGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGGCCGGTAAAGAGAAGGCAGGAGAGCGAGAAGAATCAGCAGATAGATTGGCGCGGGCAGAATGCAAGTTTTATCTATCATCAGGAGGTTGTAAGTTTGGAAAAACTTGTAAATATAACCATTCAAGAGGAAACTGTTCAGTAGCCCCAGCTCTAGAGCTTAATTTTCTTGGTCTGCCCATCCGTCTGGGTGAGAAAGAGTGTCCTTATTACATGCGGACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAATTCAATCATCCAGATCCTACAGCTGTTGGGGGAGGTGATCTTTCTGCAAGATATGGTAATGGTGGGTCAATATCATTACAAGGGGTCTCACAGCCATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTGCTCAAGGCGTGTCTCCCCAAACTTCTGAATGGAATGTGTATCAGGCACCTGTCTACCTAGCTGAGGGGAGCATGCGCCCACCTTCTGCATATGTTATGAACAACCCAGCGATTGAGAAAAATATTTATATGCATCATCAGAAGAAGATGCAGGTTGAAGAGTTTCCTGAAAGGCCTGGGGAGCCTGAATGCGGTTACTTCTTAAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGATTACAAAGTTACCGTCAACTACCTGCACCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAGAATGTCTGCACGCATTACAGTCGCTATGGAATCTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACTTATCGCCCTCTTCAGTGCCTCCACTTGATCAGCAATCGTCCTACTCAAACTCTGCTAGAGTTGAAGTGGCTGAAAATGGAGGGGCAACTGGGCAAATAATGCAATAA | 1479 | 0.4456 | MESSEPESTAASNSNENPELGFPSALSLPSSDHASETSDLNHQAEVDAVHGEFQNKLSLKDKDEEGETVNKDYKFDGSEEVCDKHGAEESYEVDGWGEYNDNWNENEDTNWTTNVNGNENDVEGGDYDLAAHEVEKKEDRSGGSNHQYPLRPDAEDCAFYLKTGTCKFGFNCKFNHPVNRRKNQAGKEKAGEREESADRLARAECKFYLSSGGCKFGKTCKYNHSRGNCSVAPALELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGGDLSARYGNGGSISLQGVSQPSVPSWSSPRTLNETAAFMPMMLSPAQGVSPQTSEWNVYQAPVYLAEGSMRPPSAYVMNNPAIEKNIYMHHQKKMQVEEFPERPGEPECGYFLKTGDCKFKSNCKFHHPRNRITKLPSTTCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINLSPSSVPPLDQQSSYSNSARVEVAENGGATGQIMQ | 492 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4782g00074 | 492 | Gene3D | - | 123 | 186 | - | - | |
| Pral4782g00074 | 492 | Gene3D | - | 335 | 417 | - | - | |
| Pral4782g00074 | 492 | SUPERFAMILY | CCCH zinc finger | 203 | 228 | IPR036855 | GO:0046872 | |
| Pral4782g00074 | 492 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Pral4782g00074 | 492 | SUPERFAMILY | CCCH zinc finger | 246 | 272 | IPR036855 | GO:0046872 | |
| Pral4782g00074 | 492 | ProSiteProfiles | Zinc finger C3H1-type profile. | 429 | 457 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | ProSiteProfiles | Zinc finger C3H1-type profile. | 151 | 179 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | ProSiteProfiles | Zinc finger C3H1-type profile. | 381 | 409 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | Gene3D | - | 187 | 275 | - | - | |
| Pral4782g00074 | 492 | ProSiteProfiles | Zinc finger C3H1-type profile. | 199 | 227 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Pral4782g00074 | 492 | Gene3D | - | 429 | 482 | - | - | |
| Pral4782g00074 | 492 | SUPERFAMILY | CCCH zinc finger | 386 | 411 | IPR036855 | GO:0046872 | |
| Pral4782g00074 | 492 | SUPERFAMILY | CCCH zinc finger | 427 | 455 | IPR036855 | GO:0046872 | |
| Pral4782g00074 | 492 | SMART | c3hfinal6 | 381 | 408 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | SMART | c3hfinal6 | 245 | 272 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | SMART | c3hfinal6 | 151 | 178 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | SMART | c3hfinal6 | 200 | 226 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | SMART | c3hfinal6 | 429 | 456 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | SUPERFAMILY | CCCH zinc finger | 151 | 180 | IPR036855 | GO:0046872 | |
| Pral4782g00074 | 492 | ProSiteProfiles | Zinc finger C3H1-type profile. | 245 | 273 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | PANTHER | PROTEIN PHOSPHATASE RELATED | 9 | 472 | - | - | |
| Pral4782g00074 | 492 | MobiDBLite | consensus disorder prediction | 54 | 74 | - | - | |
| Pral4782g00074 | 492 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 432 | 455 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 248 | 271 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 383 | 408 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 202 | 226 | IPR000571 | GO:0046872 | |
| Pral4782g00074 | 492 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 155 | 177 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4782g00074 | Pral-Chr4782 | 562131 | 566747 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4782g00074 | 148 | 458 | C2H2 Transcription Factor Family | AT3G02830 | 39.521 | 1.25e-76 | 243 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Pral4782g00074 | zf-CCCH | 1.9e-08 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4782g00074 | - | - | gmx:100786894 | 625.55 |