Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00073 ATGGTGGGTTCGGCAGCTCTGGCACCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTGGCTCCAGAGTACCGCCCTAGCTTGGCTGAGTTCCAAGATCCGATTTCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTCCCCCCCGTGCCTCCTTCTTCGAAAAAGACAGCAATTGCGAATCTTAATCGCTCGTTGGCGGCACGAGCTGCTTCTTCTGACTCTTCTAATTCGAAATCCCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAGCGGCCCGTGCAACGTCCTGTGTGGCAGAGTGGGGAATACTACACGTTCCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTATCTGAAGAAATGGACTAAGAAAGGTGGGCTCTCGCCTTTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGTTCGGCTTTTGTTCCCGTAAGTGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTGTCACGGGCAAATGGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACATCACCGATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCACATGGGGGCAGGCAAGACGTGGTATGGCGTGCCACGGGATGCAGCTGTCGCATTTGAGGAAGTGGTCAGAATTCATGGATATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTGCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCAAACATTGCAACACCTGAATGGTTGAGGGTTGCAAAAGATGCTGCTATTAGGAGGGCGTCAATAAATTACCCTCCCATGGTTTCACATTTCCAGTTACTTTATGATCTTGCCCTGGCATTGTGTTCAAGAATTCCTGGGGGCATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATAACTTTCTTCATGATCTTGGTAAAGGATCTGATATAGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGGGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTCTCCCTTTGCATGCAATTCTGAGGGAGTGAATCCCTCAAAAGGGTTTGTTTCTGGTGACCTGGTTTTCAGTAGAACCCCACAAATGAAAGGATTTTATTCAGTAAAAGAGAAGTTTGCTTCTCTGTGTGAAAGGAACAGGGTCTCCTTATTAGGCGTAAATGATAACATAGGCTCTTCAAGTTCTGTACCACCTCAAAGAGACAATGAAAGAGAGACAAGCCATGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACTTGTGGTATATTAAGCTTTGCTTGCGTTGCTATTGTGCAGCCTAGGGAGCCAGCGGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTGAGCATCAATAAGTTTACACATGCCCATGGAGATGCAACTACTTCTGAGACAAACACATTTGCAGGATGGAAGGTCAAAAAAGCCCCAGACTATGATCTTCCTGTTCAATCTGTAGGATACCAGATACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTGCTAAAGGACAAAAAGAATCATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAGGTTGACTCGGATATTGCAGTTCATGATAATGAATCTAATGTTGTGAACCGTCCATCAGGGACTGCATTTAAGAACACGAGTTGTGCCTTAACTTATTCTCAAGATGTTCATGAGGCTGACCCATCAATGCTTTGTAACACTGGATGTCCCATTGGTAATAAAAGTGCTTCATTGCCGCCACACTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCTGAAGTGGAGCAGCAGCTTCACCCAATAGGAGGAGCACACATACTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCGAAAAATGTGGCAGAAGAACTGGGAGTTGATGGCATATGGAAGAATCTTGCTTTCAGAAATGCCACCCCTGAAGATGAGGAGAGGATTCAGTCGGCTCTGGATAGTGAGGAAGCTATTCCTGCAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGCGCCAACCTTAGTCGATCTCCTCTCTATAGTAAGCAGATGCCTTATAATTCTGTCATATATAATGCATTTGGCCGTAGTACTCCAGCAACCTCACCCACAGAACCCAAGGTTTACCAAAGAAGGACCAGCAAACAGAAAAAGGTGGTTGCTGGAAAATGGTGCGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGATGAGAAAATCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGATCAGAAAGTGCCCGCACAGACAATTTTACTACTAGAAAATCTGTGAAGAAGAGGAAAATGACTGTAGAAAGTAGAAAGGCGAGGAAAGCCAGTTTCTCTGAGAGAGAATATGCTTCGGATGATTCTATTGAAGAGAAATACAACCCACTGCAAAGGACATATTCTAGAAGCAAGCAAGCCAAATATTTTGACACAGATGATGCAGCATCAGAAGAGGATTATCCTCCTCTGCAGATGTATGGAAAACCGACAAGAAAGCAAACCAAATACGTTGAAAGTGATGAAGTTTCAGATGATTCAATGGATGATAATTCTCGCATGCAGCATGGAAGAAATTTCAAAGAACCTAGATTTATTGACAGTGATGTTCTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTTGCAACAAACAAATTGAAGACTCAGAAAGAGATGGAATTTCTGAGGATTCATTGGGTGGTACTTCTCTTAAGGGGTGGAGGAAGACTTGTAAAAGCAAGCCAGCCAAATATGTTGCTAAAGATGTGATTTCTGATGATCAAATGGAGGATCATTTTCAGAAGCAGCAAAGAAGGATTCCTAAAAGCAGACAAGCCAAATATCTTGATGGAGAAGGTATCATGGTATCGGATGACCAACTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGCAGGCGAGCCAAACGCCTTGGTGGAGAGGATATTACATCTGATGACCAACTGGAGGACCATTCTGGCAAGTGTCATAGGAGGATTCCTAAAATCAGACAAGGTAAATGCCTAGTTGAGGAAGATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCCACGTGGCACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCAAGTTAAAGGCATGGATGAAGAAGACATGCATTCTGATGATCAAATGGAGGATTCATCTCATCAGCAGCGAAGGAGGATTCTTCGAAGCCAACAATCCAAGTCAAAGACACAGCAAGAAATGAAACAATCTAGTTCTTGCCGTGTGAAAGAGCAGACATCCCGGCCTCTAAAACGAGGTGCTCATCTGCTAGTAAAACCAAAGAGTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAGTAAACCTAATAACTCCAGAGATTTTAGCTTGTATTCTGATGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCACCAAAAGTTGAGGAGTATGAAGCAAAACCAAAAGAAAAGGCAACTCAGAGGAAGAAGGGGAACAATGCTGCAGCTTTGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGGTGCACTATGAGTTTTGGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGTGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCACGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACTGGGGCTCGTCCTTATGTTTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGGCATTCAGCAAAGAAAAGTCGTTAA 4560 0.443 MVGSAALAPEPNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLNRSLAARAASSDSSNSKSQPTFTTRQQQIGFCPRKQRPVQRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWTKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVSGRKYREAGEGMTLGETAWNMRGVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNNFLHDLGKGSDIVLLPRSSSDISVCSKLRVGSQQLKVNPGYSPFACNSEGVNPSKGFVSGDLVFSRTPQMKGFYSVKEKFASLCERNRVSLLGVNDNIGSSSSVPPQRDNERETSHGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFTHAHGDATTSETNTFAGWKVKKAPDYDLPVQSVGYQIQAEDQSHEVALRAKGQKESSALGLLASAYGNSSDSEEDQVDSDIAVHDNESNVVNRPSGTAFKNTSCALTYSQDVHEADPSMLCNTGCPIGNKSASLPPHSDEDSSRLHVFCLEHAAEVEQQLHPIGGAHILLLCHPDYPKVEAEAKNVAEELGVDGIWKNLAFRNATPEDEERIQSALDSEEAIPANADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPATSPTEPKVYQRRTSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDDEKILHGWSLPDKKIERSESARTDNFTTRKSVKKRKMTVESRKARKASFSEREYASDDSIEEKYNPLQRTYSRSKQAKYFDTDDAASEEDYPPLQMYGKPTRKQTKYVESDEVSDDSMDDNSRMQHGRNFKEPRFIDSDVLSDDTMGYDSDSQLRRELCNKQIEDSERDGISEDSLGGTSLKGWRKTCKSKPAKYVAKDVISDDQMEDHFQKQQRRIPKSRQAKYLDGEGIMVSDDQLEHRIHKQQRSKGRRAKRLGGEDITSDDQLEDHSGKCHRRIPKIRQGKCLVEEDVMSDDQLEDHFQKPRGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKQVKGMDEEDMHSDDQMEDSSHQQRRRILRSQQSKSKTQQEMKQSSSCRVKEQTSRPLKRGAHLLVKPKSSQKMKQPPRVQKSKPNNSRDFSLYSDEEEEGGPSTRLRKRAPKVEEYEAKPKEKATQRKKGNNAAALKVSKTKDEEAEYECDIDGCTMSFGSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00073 1519 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Pral4782g00073 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1457 1486 IPR013087 -
Pral4782g00073 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1429 1451 IPR013087 -
Pral4782g00073 1519 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 524 545 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1020 1055 - -
Pral4782g00073 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1467 1511 IPR036236 -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1346 1384 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1198 1223 - -
Pral4782g00073 1519 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Pral4782g00073 1519 Pfam jmjN domain 26 59 IPR003349 -
Pral4782g00073 1519 SUPERFAMILY beta-beta-alpha zinc fingers 1427 1463 IPR036236 -
Pral4782g00073 1519 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1453 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1168 1191 - -
Pral4782g00073 1519 Gene3D Cupin 18 369 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1125 1144 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1247 1281 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1125 1139 - -
Pral4782g00073 1519 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Pral4782g00073 1519 SMART JmjN_1 24 65 IPR003349 -
Pral4782g00073 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1489 1513 IPR013087 -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1329 1345 - -
Pral4782g00073 1519 SMART c2h2final6 1427 1451 IPR013087 -
Pral4782g00073 1519 SMART c2h2final6 1457 1481 IPR013087 -
Pral4782g00073 1519 SMART c2h2final6 1487 1513 IPR013087 -
Pral4782g00073 1519 SMART c2h2final6 1404 1426 IPR013087 -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 81 103 - -
Pral4782g00073 1519 FunFam Probable lysine-specific demethylase ELF6 1454 1483 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1288 1307 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1152 1392 - -
Pral4782g00073 1519 SUPERFAMILY Clavaminate synthase-like 191 379 - -
Pral4782g00073 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1487 1518 IPR013087 -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 932 950 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 932 955 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 996 1101 - -
Pral4782g00073 1519 Gene3D Classic Zinc Finger 1427 1511 - -
Pral4782g00073 1519 ProSiteProfiles Zinc finger C2H2 type domain profile. 1427 1456 IPR013087 -
Pral4782g00073 1519 FunFam Probable lysine-specific demethylase ELF6 1484 1513 - -
Pral4782g00073 1519 Gene3D Classic Zinc Finger 1376 1426 - -
Pral4782g00073 1519 MobiDBLite consensus disorder prediction 1065 1088 - -
Pral4782g00073 1519 ProSitePatterns Zinc finger C2H2 type domain signature. 1459 1481 IPR013087 -
Pral4782g00073 1519 SMART cupin_9 196 365 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00073 Pral-Chr4782 551267 560504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00073 1105 1518 C2H2 Transcription Factor Family AT3G48430 38.803 3.55e-70 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4782g00073 JmjC 2.6e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00073 - - gmx:100775813 1951.02