Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00072 ATGGTGGGTTCGGCAGCTCTGGCACCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTGGCTCCAGAGTACCGCCCTAGCTTGGCTGAGTTCCAAGATCCGATTTCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTCCCCCCCGTGCCTCCTTCTTCGAAAAAGACAGCAATTGCGAATCTTAATCGCTCGTTGGCGGCACGAGCTGCTTCTTCTGACTCTTCTAATTCGAAATCCCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAGCGGCCCGTGCAACGTCCTGTGTGGCAGAGTGGGGAATACTACACGTTCCAGGAATTTGAAGCGAAGGCCAAGGCTTTTGAGAAGAATTATCTGAAGAAATGGACTAAGAAAGGTGGGCTCTCGCCTTTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCGGTGGAGTACGCAAATGATATGCCTGGTTCGGCTTTTGTTCCCGTAAGTGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTGTCACGGGCAAATGGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACATCACCGATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCACATGGGGGCAGGCAAGACGTGGTATGGCGTGCCACGGGATGCAGCTGTCGCATTTGAGGAAGTGGTCAGAATTCATGGATATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTGCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCAAACATTGCAACACCTGAATGGTTGAGGGTTGCAAAAGATGCTGCTATTAGGAGGGCGTCAATAAATTACCCTCCCATGGTTTCACATTTCCAGTTACTTTATGATCTTGCCCTGGCATTGTGTTCAAGAATTCCTGGGGGCATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATAACTTTCTTCATGATCTTGGTAAAGGATCTGATATAGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGGGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTCTCCCTTTGCATGCAATTCTGAGGGAGTGAATCCCTCAAAAGGGTTTGTTTCTGGTGACCTGGTTTTCAGTAGAACCCCACAAATGAAAGGATTTTATTCAGTAAAAGAGAAGTTTGCTTCTCTGTGTGAAAGGAACAGGGTCTCCTTATTAGGCGTAAATGATAACATAGGCTCTTCAAGTTCTGTACCACCTCAAAGAGACAATGAAAGAGAGACAAGCCATGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACTTGTGGTATATTAAGCTTTGCTTGCGTTGCTATTGTGCAGCCTAGGGAGCCAGCGGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTGAGCATCAATAAGTTTACACATGCCCATGGAGATGCAACTACTTCTGAGACAAACACATTTGCAGGATGGAAGGTCAAAAAAGCCCCAGACTATGATCTTCCTGTTCAATCTGTAGGATACCAGATACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTGCTAAAGGACAAAAAGAATCATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAGGTTGACTCGGATATTGCAGTTCATGATAATGAATCTAATGTTGTGAACCGTCCATCAGGTAGTATATCTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCAATGCAACTGCAGTCAGAGTTCATGATGATTATGGGCAAAAGGCAAACTCAGAAGGTTGTGATGCCACTTCAGGGACTGCATTTAAGAACACGAGTTGTGCCTTAACTTATTCTCAAGATGTTCATGAGGCTGACCCATCAATGCTTTGTAACACTGGATGTCCCATTGGTAATAAAAGTGCTTCATTGCCGCCACACTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCTGAAGTGGAGCAGCAGCTTCACCCAATAGGAGGAGCACACATACTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCGAAAAATGTGGCAGAAGAACTGGGAGTTGATGGCATATGGAAGAATCTTGCTTTCAGAAATGCCACCCCTGAAGATGAGGAGAGGATTCAGTCGGCTCTGGATAGTGAGGAAGCTATTCCTGCAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGCGCCAACCTTAGTCGATCTCCTCTCTATAGTAAGCAGATGCCTTATAATTCTGTCATATATAATGCATTTGGCCGTAGTACTCCAGCAACCTCACCCACAGAACCCAAGGTTTACCAAAGAAGGACCAGCAAACAGAAAAAGGTGGTTGCTGGAAAATGGTGCGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGATGAGAAAATCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGATCAGAAAGTGCCCGCACAGACAATTTTACTACTAGAAAATCTGTGAAGAAGAGGAAAATGACTGTAGAAAGTAGAAAGGCGAGGAAAGCCAGTTTCTCTGAGAGAGAATATGCTTCGGATGATTCTATTGAAGAGAAATACAACCCACTGCAAAGGACATATTCTAGAAGCAAGCAAGCCAAATATTTTGACACAGATGATGCAGCATCAGAAGAGGATTATCCTCCTCTGCAGATGTATGGAAAACCGACAAGAAAGCAAACCAAATACGTTGAAAGTGATGAAGTTTCAGATGATTCAATGGATGATAATTCTCGCATGCAGCATGGAAGAAATTTCAAAGAACCTAGATTTATTGACAGTGATGTTCTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTTGCAACAAACAAATTGAAGACTCAGAAAGAGATGGAATTTCTGAGGATTCATTGGGTGGTACTTCTCTTAAGGGGTGGAGGAAGACTTGTAAAAGCAAGCCAGCCAAATATGTTGCTAAAGATGTGATTTCTGATGATCAAATGGAGGATCATTTTCAGAAGCAGCAAAGAAGGATTCCTAAAAGCAGACAAGCCAAATATCTTGATGGAGAAGGTATCATGGTATCGGATGACCAACTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGCAGGCGAGCCAAACGCCTTGGTGGAGAGGATATTACATCTGATGACCAACTGGAGGACCATTCTGGCAAGTGTCATAGGAGGATTCCTAAAATCAGACAAGGTAAATGCCTAGTTGAGGAAGATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCCACGTGGCACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCAAGTTAAAGGCATGGATGAAGAAGACATGCATTCTGATGATCAAATGGAGGATTCATCTCATCAGCAGCGAAGGAGGATTCTTCGAAGCCAACAATCCAAGTCAAAGACACAGCAAGAAATGAAACAATCTAGTTCTTGCCGTGTGAAAGAGCAGACATCCCGGCCTCTAAAACGAGGTGCTCATCTGCTAGTAAAACCAAAGAGTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAGTAAACCTAATAACTCCAGAGATTTTAGCTTGTATTCTGATGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCACCAAAAGTTGAGGAGTATGAAGCAAAACCAAAAGAAAAGGCAACTCAGAGGAAGAAGGGGAACAATGCTGCAGCTTTGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGGTGCACTATGAGTTTTGGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGTGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCACGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACTGGGGCTCGTCCTTATGTTTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGGCATTCAGCAAAGAAAAGTCGTTAA 4683 0.4422 MVGSAALAPEPNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVPPSSKKTAIANLNRSLAARAASSDSSNSKSQPTFTTRQQQIGFCPRKQRPVQRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWTKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVSGRKYREAGEGMTLGETAWNMRGVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNNFLHDLGKGSDIVLLPRSSSDISVCSKLRVGSQQLKVNPGYSPFACNSEGVNPSKGFVSGDLVFSRTPQMKGFYSVKEKFASLCERNRVSLLGVNDNIGSSSSVPPQRDNERETSHGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFTHAHGDATTSETNTFAGWKVKKAPDYDLPVQSVGYQIQAEDQSHEVALRAKGQKESSALGLLASAYGNSSDSEEDQVDSDIAVHDNESNVVNRPSGSISQNMSSLPSHFQDCNATAVRVHDDYGQKANSEGCDATSGTAFKNTSCALTYSQDVHEADPSMLCNTGCPIGNKSASLPPHSDEDSSRLHVFCLEHAAEVEQQLHPIGGAHILLLCHPDYPKVEAEAKNVAEELGVDGIWKNLAFRNATPEDEERIQSALDSEEAIPANADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPATSPTEPKVYQRRTSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDDEKILHGWSLPDKKIERSESARTDNFTTRKSVKKRKMTVESRKARKASFSEREYASDDSIEEKYNPLQRTYSRSKQAKYFDTDDAASEEDYPPLQMYGKPTRKQTKYVESDEVSDDSMDDNSRMQHGRNFKEPRFIDSDVLSDDTMGYDSDSQLRRELCNKQIEDSERDGISEDSLGGTSLKGWRKTCKSKPAKYVAKDVISDDQMEDHFQKQQRRIPKSRQAKYLDGEGIMVSDDQLEHRIHKQQRSKGRRAKRLGGEDITSDDQLEDHSGKCHRRIPKIRQGKCLVEEDVMSDDQLEDHFQKPRGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKQVKGMDEEDMHSDDQMEDSSHQQRRRILRSQQSKSKTQQEMKQSSSCRVKEQTSRPLKRGAHLLVKPKSSQKMKQPPRVQKSKPNNSRDFSLYSDEEEEGGPSTRLRKRAPKVEEYEAKPKEKATQRKKGNNAAALKVSKTKDEEAEYECDIDGCTMSFGSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 973 991 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 973 996 - -
Pral4782g00072 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Pral4782g00072 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1468 1504 IPR036236 -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1106 1129 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 524 545 - -
Pral4782g00072 1560 SMART c2h2final6 1445 1467 IPR013087 -
Pral4782g00072 1560 SMART c2h2final6 1528 1554 IPR013087 -
Pral4782g00072 1560 SMART c2h2final6 1468 1492 IPR013087 -
Pral4782g00072 1560 SMART c2h2final6 1498 1522 IPR013087 -
Pral4782g00072 1560 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Pral4782g00072 1560 Pfam jmjN domain 26 59 IPR003349 -
Pral4782g00072 1560 FunFam Probable lysine-specific demethylase ELF6 1495 1524 - -
Pral4782g00072 1560 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
Pral4782g00072 1560 SMART JmjN_1 24 65 IPR003349 -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1239 1264 - -
Pral4782g00072 1560 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Pral4782g00072 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 81 103 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1061 1096 - -
Pral4782g00072 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1554 IPR013087 -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1387 1425 - -
Pral4782g00072 1560 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 686 705 - -
Pral4782g00072 1560 Gene3D Classic Zinc Finger 1468 1552 - -
Pral4782g00072 1560 FunFam Probable lysine-specific demethylase ELF6 1525 1554 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1288 1322 - -
Pral4782g00072 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1508 1552 IPR036236 -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1193 1433 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1370 1386 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1037 1142 - -
Pral4782g00072 1560 Gene3D Cupin 18 369 - -
Pral4782g00072 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1468 1497 IPR013087 -
Pral4782g00072 1560 Gene3D Classic Zinc Finger 1417 1467 - -
Pral4782g00072 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1470 1492 IPR013087 -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1209 1232 - -
Pral4782g00072 1560 SUPERFAMILY Clavaminate synthase-like 191 379 - -
Pral4782g00072 1560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1494 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1166 1180 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1166 1185 - -
Pral4782g00072 1560 MobiDBLite consensus disorder prediction 1329 1348 - -
Pral4782g00072 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1559 IPR013087 -
Pral4782g00072 1560 SMART cupin_9 196 365 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00072 Pral-Chr4782 551267 560504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00072 1146 1559 C2H2 Transcription Factor Family AT3G48430 38.803 3.83e-70 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4782g00072 JmjC 2.7e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00072 - - gmx:100775813 1964.12