Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00071 ATGCCTGGTTCGGCTTTTGTTCCCGTAAGTGGGAGAAAATATAGAGAGGCAGGGGAGGGAATGACTCTTGGTGAGACTGCATGGAACATGAGGGGGGTGTCACGGGCAAATGGCTCTCTGTTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACATCACCGATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCATGTAGAGGATCATGACCTGCATAGCTTGAATTACCTTCACATGGGGGCAGGCAAGACGTGGTATGGCGTGCCACGGGATGCAGCTGTCGCATTTGAGGAAGTGGTCAGAATTCATGGATATGGAGGAGAAATAAATCCTCTTGTTACTTTTGCTGTGCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCAAACATTGCAACACCTGAATGGTTGAGGGTTGCAAAAGATGCTGCTATTAGGAGGGCGTCAATAAATTACCCTCCCATGGTTTCACATTTCCAGTTACTTTATGATCTTGCCCTGGCATTGTGTTCAAGAATTCCTGGGGGCATCAGTGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGTTACAGAACAATAACTTTCTTCATGATCTTGGTAAAGGATCTGATATAGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGGGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTCTCCCTTTGCATGCAATTCTGAGGGAGTGAATCCCTCAAAAGGGTTTGTTTCTGGTGACCTGGTTTTCAGTAGAACCCCACAAATGAAAGGATTTTATTCAGTAAAAGAGAAGTTTGCTTCTCTGTGTGAAAGGAACAGGGTCTCCTTATTAGGCGTAAATGATAACATAGGCTCTTCAAGTTCTGTACCACCTCAAAGAGACAATGAAAGAGAGACAAGCCATGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTCACTTGTGGTATATTAAGCTTTGCTTGCGTTGCTATTGTGCAGCCTAGGGAGCCAGCGGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTGAGCATCAATAAGTTTACACATGCCCATGGAGATGCAACTACTTCTGAGACAAACACATTTGCAGGATGGAAGGTCAAAAAAGCCCCAGACTATGATCTTCCTGTTCAATCTGTAGGATACCAGATACAGGCGGAAGATCAATCACATGAGGTAGCTTTACGTGCTAAAGGACAAAAAGAATCATCAGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAGGTTGACTCGGATATTGCAGTTCATGATAATGAATCTAATGTTGTGAACCGTCCATCAGGTAGTATATCTCAGAATATGTCTAGCTTGCCTTCTCATTTCCAAGATTGCAATGCAACTGCAGTCAGAGTTCATGATGATTATGGGCAAAAGGCAAACTCAGAAGGTTGTGATGCCACTTCAGGGACTGCATTTAAGAACACGAGTTGTGCCTTAACTTATTCTCAAGATGTTCATGAGGCTGACCCATCAATGCTTTGTAACACTGGATGTCCCATTGGTAATAAAAGTGCTTCATTGCCGCCACACTCTGACGAAGATTCATCTAGATTGCATGTCTTCTGTCTAGAGCATGCTGCTGAAGTGGAGCAGCAGCTTCACCCAATAGGAGGAGCACACATACTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCGAAAAATGTGGCAGAAGAACTGGGAGTTGATGGCATATGGAAGAATCTTGCTTTCAGAAATGCCACCCCTGAAGATGAGGAGAGGATTCAGTCGGCTCTGGATAGTGAGGAAGCTATTCCTGCAAATGCAGACTGGGCTGTAAAGCTGGGAATCAATCTCTTCTATAGCGCCAACCTTAGTCGATCTCCTCTCTATAGTAAGCAGATGCCTTATAATTCTGTCATATATAATGCATTTGGCCGTAGTACTCCAGCAACCTCACCCACAGAACCCAAGGTTTACCAAAGAAGGACCAGCAAACAGAAAAAGGTGGTTGCTGGAAAATGGTGCGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGATGAGAAAATCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGATCAGAAAGTGCCCGCACAGACAATTTTACTACTAGAAAATCTGTGAAGAAGAGGAAAATGACTGTAGAAAGTAGAAAGGCGAGGAAAGCCAGTTTCTCTGAGAGAGAATATGCTTCGGATGATTCTATTGAAGAGAAATACAACCCACTGCAAAGGACATATTCTAGAAGCAAGCAAGCCAAATATTTTGACACAGATGATGCAGCATCAGAAGAGGATTATCCTCCTCTGCAGATGTATGGAAAACCGACAAGAAAGCAAACCAAATACGTTGAAAGTGATGAAGTTTCAGATGATTCAATGGATGATAATTCTCGCATGCAGCATGGAAGAAATTTCAAAGAACCTAGATTTATTGACAGTGATGTTCTCTCAGATGATACAATGGGATATGATTCTGATTCACAACTGAGGAGAGAGCTTTGCAACAAACAAATTGAAGACTCAGAAAGAGATGGAATTTCTGAGGATTCATTGGGTGGTACTTCTCTTAAGGGGTGGAGGAAGACTTGTAAAAGCAAGCCAGCCAAATATGTTGCTAAAGATGTGATTTCTGATGATCAAATGGAGGATCATTTTCAGAAGCAGCAAAGAAGGATTCCTAAAAGCAGACAAGCCAAATATCTTGATGGAGAAGGTATCATGGTATCGGATGACCAACTGGAGCATCGAATACATAAGCAGCAACGATCTAAAGGCAGGCGAGCCAAACGCCTTGGTGGAGAGGATATTACATCTGATGACCAACTGGAGGACCATTCTGGCAAGTGTCATAGGAGGATTCCTAAAATCAGACAAGGTAAATGCCTAGTTGAGGAAGATGTAATGTCTGATGACCAATTGGAGGATCACTTTCAGAAGCCACGTGGCACTATTCCAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGTTGACTCATCTGATAACTATTCTCATCTGCTGCATAGAACTCCTAAGAGGAAGCAAGTTAAAGGCATGGATGAAGAAGACATGCATTCTGATGATCAAATGGAGGATTCATCTCATCAGCAGCGAAGGAGGATTCTTCGAAGCCAACAATCCAAGTCAAAGACACAGCAAGAAATGAAACAATCTAGTTCTTGCCGTGTGAAAGAGCAGACATCCCGGCCTCTAAAACGAGGTGCTCATCTGCTAGTAAAACCAAAGAGTTCTCAGAAAATGAAGCAGCCTCCTCGAGTGCAGAAAAGTAAACCTAATAACTCCAGAGATTTTAGCTTGTATTCTGATGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAGAGAGCACCAAAAGTTGAGGAGTATGAAGCAAAACCAAAAGAAAAGGCAACTCAGAGGAAGAAGGGGAACAATGCTGCAGCTTTGAAGGTTTCCAAAACGAAGGATGAGGAAGCAGAATATGAGTGTGATATTGATGGGTGCACTATGAGTTTTGGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAGGGATGTGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCACGAGGATGACCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCACGTACTGAGCATATTCGAGTGCATACTGGGGCTCGTCCTTATGTTTGTGCTGAGCCAGGGTGTGGGCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGGCATTCAGCAAAGAAAAGTCGTTAA 4161 0.436 MPGSAFVPVSGRKYREAGEGMTLGETAWNMRGVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRIPGGISAEPRSSRLRDKRKSEGETVIKELFVQDVLQNNNFLHDLGKGSDIVLLPRSSSDISVCSKLRVGSQQLKVNPGYSPFACNSEGVNPSKGFVSGDLVFSRTPQMKGFYSVKEKFASLCERNRVSLLGVNDNIGSSSSVPPQRDNERETSHGDGLSDQRLFSCVTCGILSFACVAIVQPREPAARYLMSADCSFFNDWVVGSGVSINKFTHAHGDATTSETNTFAGWKVKKAPDYDLPVQSVGYQIQAEDQSHEVALRAKGQKESSALGLLASAYGNSSDSEEDQVDSDIAVHDNESNVVNRPSGSISQNMSSLPSHFQDCNATAVRVHDDYGQKANSEGCDATSGTAFKNTSCALTYSQDVHEADPSMLCNTGCPIGNKSASLPPHSDEDSSRLHVFCLEHAAEVEQQLHPIGGAHILLLCHPDYPKVEAEAKNVAEELGVDGIWKNLAFRNATPEDEERIQSALDSEEAIPANADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYNAFGRSTPATSPTEPKVYQRRTSKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDDDDEKILHGWSLPDKKIERSESARTDNFTTRKSVKKRKMTVESRKARKASFSEREYASDDSIEEKYNPLQRTYSRSKQAKYFDTDDAASEEDYPPLQMYGKPTRKQTKYVESDEVSDDSMDDNSRMQHGRNFKEPRFIDSDVLSDDTMGYDSDSQLRRELCNKQIEDSERDGISEDSLGGTSLKGWRKTCKSKPAKYVAKDVISDDQMEDHFQKQQRRIPKSRQAKYLDGEGIMVSDDQLEHRIHKQQRSKGRRAKRLGGEDITSDDQLEDHSGKCHRRIPKIRQGKCLVEEDVMSDDQLEDHFQKPRGTIPKSRQNKRKNKVMVDSSDNYSHLLHRTPKRKQVKGMDEEDMHSDDQMEDSSHQQRRRILRSQQSKSKTQQEMKQSSSCRVKEQTSRPLKRGAHLLVKPKSSQKMKQPPRVQKSKPNNSRDFSLYSDEEEEGGPSTRLRKRAPKVEEYEAKPKEKATQRKKGNNAAALKVSKTKDEEAEYECDIDGCTMSFGSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSAKKSR 1386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00071 1386 ProSiteProfiles Zinc finger C2H2 type domain profile. 1324 1353 IPR013087 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 512 531 - -
Pral4782g00071 1386 Gene3D Classic Zinc Finger 1243 1293 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1065 1090 - -
Pral4782g00071 1386 FunFam Probable lysine-specific demethylase ELF6 1351 1380 - -
Pral4782g00071 1386 ProSitePatterns Zinc finger C2H2 type domain signature. 1296 1318 IPR013087 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 887 922 - -
Pral4782g00071 1386 Pfam JmjC domain, hydroxylase 55 173 IPR003347 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1114 1148 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 799 817 - -
Pral4782g00071 1386 Gene3D Classic Zinc Finger 1294 1378 - -
Pral4782g00071 1386 SMART cupin_9 22 191 IPR003347 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 799 822 - -
Pral4782g00071 1386 SUPERFAMILY beta-beta-alpha zinc fingers 1294 1330 IPR036236 -
Pral4782g00071 1386 SUPERFAMILY Clavaminate synthase-like 38 205 - -
Pral4782g00071 1386 ProSitePatterns Zinc finger C2H2 type domain signature. 1326 1348 IPR013087 -
Pral4782g00071 1386 ProSiteProfiles JmjC domain profile. 25 191 IPR003347 -
Pral4782g00071 1386 SUPERFAMILY beta-beta-alpha zinc fingers 1334 1378 IPR036236 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1213 1251 - -
Pral4782g00071 1386 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 1320 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1155 1174 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1196 1212 - -
Pral4782g00071 1386 Gene3D Cupin 1 195 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1035 1058 - -
Pral4782g00071 1386 ProSiteProfiles Zinc finger C2H2 type domain profile. 1294 1323 IPR013087 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 932 955 - -
Pral4782g00071 1386 FunFam Probable lysine-specific demethylase ELF6 1321 1350 - -
Pral4782g00071 1386 SMART c2h2final6 1294 1318 IPR013087 -
Pral4782g00071 1386 SMART c2h2final6 1324 1348 IPR013087 -
Pral4782g00071 1386 SMART c2h2final6 1271 1293 IPR013087 -
Pral4782g00071 1386 SMART c2h2final6 1354 1380 IPR013087 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 992 1011 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 992 1006 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 1019 1259 - -
Pral4782g00071 1386 ProSiteProfiles Zinc finger C2H2 type domain profile. 1354 1385 IPR013087 -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 863 968 - -
Pral4782g00071 1386 MobiDBLite consensus disorder prediction 350 371 - -
Pral4782g00071 1386 ProSitePatterns Zinc finger C2H2 type domain signature. 1356 1380 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00071 Pral-Chr4782 545723 560504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00071 182 901 C2H2 Transcription Factor Family AT3G48430 44.369 8.63e-175 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4782g00071 JmjC 2.3e-35 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00071 - - gmx:100775813 1741.47