Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00065 ATGATGGATGGGAGGCGGCATTCAGTTGATGTTCCTATTTCGAAAACTCTTGTAGCGTTGAGGAGAGTCAGGTCATTGAGGGATCCATCTACGAATTCTATGAGCAAACTCTGTTCTTCGATTGATAATCTGCACTGGGAAAACAGTTCGGGCAATGGGATTTCTCTGCGGTTCTTGGACGCTTCTCGCGCTTGTGATTCTGATGATAATGGTGCATTAAGGTCGAAGAATTTGAGTTGTAGCATGCGCAGAGAGCACGATGCTGCTGATTTTGAATTGAACTGTGGCCATTTCAACTCTAAACTGAAGTCTTGTCCTGAAGGCCAGCAGGATGAAGAACTAGCTTACTCTAATTTGAATCAGGAAGTCAATTCCGGTATTAAGTCGACAAGTGATGGCTGCTATAGCAACCATAGACGTAAGGAATTAGATATAGCATCTGTTATTCCTCCCAGCAACGAGGCAACTTCTGGGTCATCAAAGTTAGGGACAATTGATCATTCTATGTTGACTAGAAAAACTCTAGGCAAGAATCAAGTGAAATCATCCGAAGTTTTGGGCGATATTGCAGGTCTTGGGGGTAGTCCATGCCTTTCAGTCGGTGAAGCCTTCTCAGCTTATAGTTCTTCGACGAACATGAATCAAGATGTAGATATTGGAGATGATAATCACCATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCGCCAAGGTTTAGAGAATCAAATGTATATTCTGATATAGAAGACCGTCCTCTGATATCCTGGCACACAGATGAGACGGCTCTTTATGGACATAAAAACATGAGACACATTGGCGGTGAAATCAGTCCAAATTTTGAAACTCCAAGAAGTTTATGTATGAAATTTAGGCCAAAATCTTTTAGTGATTTGGTTGGGCAAAATGTGGTAGCGAGGTCTCTTTTGGGCGCCATCTTTAAGGGAAGGGTAACCTCATTCTATCTCTTCCATGGTCCTCGTGGTACTGGCAAGACATCTGCGTCCAGGATTTTTGCTGCTGCCCTGAATTGTCTCTCCCTCGAGGAGGAAAGGCCATGTGGTCTTTGCAGAGAGTGCGTTTTGTTCTTTTCTGGTAGAAGTAAAGATGTTAAAGAAGTTGATTCTGTGAAACTTAATCGTATTGACAAGATAAAATCCCTTGTTAAAAATGCAAGCATCCCTCCAGTTTCTTCACGTTTTAAGATATTTATTGTTGATGAGTGCCAGTTGATCACGGGGGAGGCATGGGCAAGTCTTTTGAATAGCCTAGAGAGCCTTTCTCAGCATGTGGTCCTTATTATGATCACGCCAGATCTGGACAAACTTCCCCGAAGTACAGTTTCCAGGGCCCAGAGGTATCACTTCCCTAAGATAAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGCATAGAAGAAGGTCTTGACTTTGAACAGGAGGCTTTGGGCTTCATCTCTGCTAAATCCTGTGGTTCACTTAGGGATGCAGAAATCATGCTTGATCAGCTGAGCTTGCTTGGTAAAAAAATCACAATTTCCTTAGCCCATGAACTTACTGGTATCATCTCTGACGACGAATTGCTTGAATTACTGGATCTGGCTCTGTCTTCCGACACTTCAAATACAGTTAAAAGAGCGCGAGAGTTAATGAGATCAAGAGTGGACCCTTTACAACTTATATCACAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGATGATAGCGGGTCTGAAATCAGAATGAGGTTTTCCAATAGACGCATCATAGCTGAAGCTGACCTTCAAAAACTAAATCATGCGTTGAGAATACTTTCTGAAACGGAGAAGCAATTACGGATTTCCAAGAATCAAACAACATGGTTCACGGTAGCTCTTCTGCAGTTAAGCTCTGCAGAACATTCTTCTGTCGAAGCAAGTGATACGAAATTGAGATATGCATGCAATGGAGATGGTGATTTCTGCAGTACATCATCTACAGGGGATAGCCGGAAGCATCCTGCCTCTGCTCAGTATGATAACAAGTTGTTTAGATTAGGACAACAGGATCACGCATTAAGTTCCATATGGCATAAAGCGACAGAGTCATGTCAATCTAACAGACTCAAGACTTTTCTTAGGAAACAGGGGAAGTTGTCTTCTCTGTGTGTTGATCGCGGTCTAGCAATTGCTGAATTGGATTTCCAGCATCGCAACTACGTATATAGGGCTGAGAAGTCGTGGAAAATGATTGCCAGTTCCCTGCAGCTCATACTGGGTTGTAACATAGAGCTCAGGATCAATCATGTACCTTGCACTTCTGATTCTACATATGCCAAGTTGAAGAGGTCATCTTTCAGTTTTTTCACTTGTTCCCGTAGAATTCATCGAAAGGCGCTCTCAGATAATGAACAAGGAAGTGAACCAGACTACACTGATCACACCTCGCAGAAAGCCATGATGAAGGATAGAACTTGTAAATCTGATTGTGGATCTCAGATGCAACAACCTGACTCTTATCATGGAATGGAGGTAGTAACAGCATTGAGAGATGGTGAAGGAAATTTGCTGAGCTCAAGGAAGAATTTGTTGAATAGTTCATGTCAAGAGACTTCAAGGACCTCAAGTTCTGGTGTTGATTCCTCCAAGGAAGAGGGATTTGATTATGCACACCTAGTTTCATCAAACCCTGATTCAGACTATCAATCAAAATGTTTCCCTCGAACTTTCTGGATTCATAAGAAGAAGTTACATTCTCCAGATCTATCTCAGTTGGTATTCGAGGGCACTCAACAACAGAAAGAATTTGTTTTATCCATCCCAAATTACACCTGTTCTGAGACGTATAGCTATGCTAGTGAACCATGTGTTTTCTCCACCAGCTCTAACAACTGTACCAAAGCCGCCCAAAATGAGAAGAGCCCGAAGTTGGATTCAGATTTGCTTTGTTGGAGAACCCCGAGATCTCCCTTGAGGAAGTCATGGCACGTGGGGCTTCAGCAGCATAAGTCGCATCCAGCAGGGAGGTTTCTTTCCTGTGCCTCTGCTAAGTAG 3042 0.4267 MMDGRRHSVDVPISKTLVALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRACDSDDNGALRSKNLSCSMRREHDAADFELNCGHFNSKLKSCPEGQQDEELAYSNLNQEVNSGIKSTSDGCYSNHRRKELDIASVIPPSNEATSGSSKLGTIDHSMLTRKTLGKNQVKSSEVLGDIAGLGGSPCLSVGEAFSAYSSSTNMNQDVDIGDDNHHGCGISCCWSKSPRFRESNVYSDIEDRPLISWHTDETALYGHKNMRHIGGEISPNFETPRSLCMKFRPKSFSDLVGQNVVARSLLGAIFKGRVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEEERPCGLCRECVLFFSGRSKDVKEVDSVKLNRIDKIKSLVKNASIPPVSSRFKIFIVDECQLITGEAWASLLNSLESLSQHVVLIMITPDLDKLPRSTVSRAQRYHFPKIKDADIASRLEKICIEEGLDFEQEALGFISAKSCGSLRDAEIMLDQLSLLGKKITISLAHELTGIISDDELLELLDLALSSDTSNTVKRARELMRSRVDPLQLISQLANLIMDILAGKCDDSGSEIRMRFSNRRIIAEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAEHSSVEASDTKLRYACNGDGDFCSTSSTGDSRKHPASAQYDNKLFRLGQQDHALSSIWHKATESCQSNRLKTFLRKQGKLSSLCVDRGLAIAELDFQHRNYVYRAEKSWKMIASSLQLILGCNIELRINHVPCTSDSTYAKLKRSSFSFFTCSRRIHRKALSDNEQGSEPDYTDHTSQKAMMKDRTCKSDCGSQMQQPDSYHGMEVVTALRDGEGNLLSSRKNLLNSSCQETSRTSSSGVDSSKEEGFDYAHLVSSNPDSDYQSKCFPRTFWIHKKKLHSPDLSQLVFEGTQQQKEFVLSIPNYTCSETYSYASEPCVFSTSSNNCTKAAQNEKSPKLDSDLLCWRTPRSPLRKSWHVGLQQHKSHPAGRFLSCASAK 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00065 1013 CDD HLD_clamp_pol_III_gamma_tau 458 521 IPR045085 -
Pral4782g00065 1013 NCBIfam DNA polymerase III subunit gamma/tau 285 632 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pral4782g00065 1013 Gene3D - 279 456 IPR027417 -
Pral4782g00065 1013 SMART AAA_5 317 477 IPR003593 GO:0016887
Pral4782g00065 1013 MobiDBLite consensus disorder prediction 796 818 - -
Pral4782g00065 1013 Gene3D - 459 521 - -
Pral4782g00065 1013 FunFam DNA polymerase III subunit gamma/tau 459 521 - -
Pral4782g00065 1013 Gene3D - 522 635 - -
Pral4782g00065 1013 Pfam DNA polymerase III, delta subunit 301 458 - -
Pral4782g00065 1013 SUPERFAMILY post-AAA+ oligomerization domain-like 522 634 IPR008921 GO:0003677|GO:0006260
Pral4782g00065 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 507 IPR027417 -
Pral4782g00065 1013 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 287 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00065 Pral-Chr4782 504162 509262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00065 276 570 Core DNA Replication Machinery Family AT1G21690 25.084 1.31e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00065 - - pcin:129308301 1762.27