Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00064 ATGACTCCTACCTTCTTCTTCCTCTGTTTTCTCCTCATCCCAACCCTCATTTCCTCTTCCCCTTTCCACGACCCTGAATCCATCGTCCAAGAGGTCAATAGGAAAATCAATGCCTCGGTCGCTAGGCGGAATTTAGGTTACCTGTCGTGTGGGACTGGCAACCCTATCGACGATTGCTGGAGGTGCGATCCAAACTGGGAGAAGAACAGGCAGAGGCTGGCTGATTGTGCTATAGGGTTCGGGAAGAACGCCATTGGCGGGAGAAACGGTAGGATTTACGTGGTGACCGACGCCGGCGACGACGATCCGGTGAATCCCCGGCCGGGGACTCTCCGTTACGCCGTGATTCAAGACGAACCGTTGTGGATTATATTCGCGAGGGACATGGTGATTCAGTTGAAGGAGGAGCTGATCATGAATTCCTTCAAGACAATCGATGGACGAGGCGCGAGCGTGCACATTGCGGGTGGGCCCTGCATAACGATCCAGTACGTAACCAACATTATAATCCATGGAATTCATATACACGACTGCAAGCAGGGAGGGAACGCTATGGTGAGGAGCTCCCCACGGCACTACGGCTGGAGAACCGTATCGGACGGCGACGGCGTGTCAATCTTCGGAGGAAGCCACGTGTGGGTAGATCACTGCTCGTTGTCGAATTGTAAGGATGGTTTGATCGATGCTATTATGGGGTCCAGCGCCATAACCATTTCCAACAATCACATGACGCACCATGATAAGGTCATGCTACTGGGTCATAGCGATTCTTATACGCAAGACAAGAACATGCAAGTCACCATCGCTTTTAACCACTTTGGAGAAGGCCTCGTTCAAAGAATGCCGAGATGCAGACTTGGATACTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGCGCTAACCCTACCATCAATAGCCAAGGCAACAGATTCGCGGCACCCGATAACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCCCCAGAGAGCGAATGGAGGGGCTGGAATTGGAGATCAGAAGGGGACTTGTTGCTAAACGGTGCGTTTTTCAGATCATCAGGTGCTGGAGCCTCCTCTAGCTACGCAAGGGCTTCTAGCTTGAGTGCCAGACCATCTTCTCTTGTGGGTCCCCTCACCTCCGGTGCTGGCACCCTCACCTGCAGAAAGGGTTCGCGCTGCTGA 1209 0.5236 MTPTFFFLCFLLIPTLISSSPFHDPESIVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRNGRIYVVTDAGDDDPVNPRPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRSSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIMGSSAITISNNHMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFAAPDNRFSKEVTKHEDAPESEWRGWNWRSEGDLLLNGAFFRSSGAGASSSYARASSLSARPSSLVGPLTSGAGTLTCRKGSRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Pral4782g00064 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Pral4782g00064 402 Gene3D - 53 395 IPR012334 -
Pral4782g00064 402 SMART amb_all 128 325 IPR002022 -
Pral4782g00064 402 PANTHER PECTATE LYASE 18-RELATED 22 400 IPR045032 GO:0030570
Pral4782g00064 402 Pfam Pectate lyase 137 319 IPR002022 -
Pral4782g00064 402 SUPERFAMILY Pectin lyase-like 35 396 IPR011050 -
Pral4782g00064 402 FunFam Pectate lyase 53 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00064 Pral-Chr4782 478210 480390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00064 7 402 Polysaccharide Lyase AT4G24780 85.139 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00064 K01728 - gmx:100101868 729.939