Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00059 ATGTCTATCACGTCTATACCTTCCTTGAAGACCCTAACAATGGCGGAATTACGCCTTCTCTCGCTGCCCTCTTTAACCTGCAACAAATCCAAGCACCCTTTCATCTCCATTCCTTCTAAACCTTTTAAACTTCAGGTCTCTTGCTCCAATTCCTCCCTCTTTCTACCATCTCTATCCCTCACTAGGAAAACCCGCAATTTATCTATACTCACATTTGTAGCCCAGACTTCGGACTGGGCTCAGCAGGACGACGACAACACCGTCACCATAGATGAAGAGGAAAGCCAAGGCGTGGATGACGCAGAAGCTCGTCTTTCGGATTGGGAGGTTGAGGGTGAAGGCGCAGGAGTTGAGGGTAGCGAGGGCGAAGGAGAGAGCAATGAAGATGATGAATATTTGAAGGACGGGGATTTTCCAGAACCCCCCGAAGATGCAAAACTTTTTGTTGGTAATTTGCCTTATGATGTTGATAGTCAGAGATTAGCCATGCTTTTTGAGCAGGCCGGAACGGTGGAAATTGCCGAGGTTATTTATAATAGGAGCACTGACCAAAGTCGTGGGTTCGGATTCGTAACGATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTCGAAAAGTTCCATCGCTACGATCTAGATGGAAGACTGTTGACTGTTAACAAGGCTGCTCCAAGAGGAACAGAGCCTGAACGCCCACCCCGGGTCTTTGAACCATCCTTTAGAGTCTATGTAGGCAACTTGCCATGGGATGTCGATAATGATCGCCTGGAGCAGATTTTCAGCGAACATGGTAAGGTTGTGAGTGCTCGGATGGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAACAGAAATGAACGATGCCATTGCTGCTCTTGATGGCCAGAGTTTGGACGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGTGGCGGCTTTTGA 975 0.48 MSITSIPSLKTLTMAELRLLSLPSLTCNKSKHPFISIPSKPFKLQVSCSNSSLFLPSLSLTRKTRNLSILTFVAQTSDWAQQDDDNTVTIDEEESQGVDDAEARLSDWEVEGEGAGVEGSEGEGESNEDDEYLKDGDFPEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYDLDGRLLTVNKAAPRGTEPERPPRVFEPSFRVYVGNLPWDVDNDRLEQIFSEHGKVVSARMVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00059 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 228 - -
Pral4782g00059 324 Gene3D - 75 228 IPR012677 -
Pral4782g00059 324 SUPERFAMILY RNA-binding domain, RBD 230 322 IPR035979 GO:0003676
Pral4782g00059 324 SMART rrm1_1 240 313 IPR000504 GO:0003723
Pral4782g00059 324 SMART rrm1_1 146 219 IPR000504 GO:0003723
Pral4782g00059 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 311 IPR000504 GO:0003723
Pral4782g00059 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
Pral4782g00059 324 PANTHER OS02G0815200 PROTEIN 39 319 - -
Pral4782g00059 324 CDD RRM2_NsCP33_like 240 315 - -
Pral4782g00059 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 229 323 - -
Pral4782g00059 324 MobiDBLite consensus disorder prediction 90 140 - -
Pral4782g00059 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 317 IPR000504 GO:0003723
Pral4782g00059 324 SUPERFAMILY RNA-binding domain, RBD 141 231 IPR035979 GO:0003676
Pral4782g00059 324 Gene3D - 229 324 IPR012677 -
Pral4782g00059 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Pral4782g00059 324 MobiDBLite consensus disorder prediction 114 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00059 Pral-Chr4782 453204 456275 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00059 147 321 Eukaryotic Initiation Factors Gene Family AT3G16380 36.957 1.90e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00059 - - qsa:O6P43_030799 445.662