Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00013 ATGAACCCTCACGACAACAGATATGCAGACTCGACTTCTTATCGTAACCGCAGGAGTGATTTACTTGGATCTATGCCGCCTATGGTCCCTCCAGTGATTGGCGGTGCCAGCTCGAGCTACGGCCGGGGAGGTCCTGCCTCCTATGGTCCTTCACCGGTTGGTTATAATATGGGAGGAAGAGGTGCTGGGAGTGCTCTTGGAGCGGCACCTGCCCCAAACTATAGTGAGTTGCCGTCGTTCATGCCGCCTCCTGGAGGCTTTGATATAGGGCGTGGTGGTGTCTCTAGCCAAAGGGGGTTCGGCGGTAGACTTGGAAACGGTCCTGTTGGTGATAGAAAAGACGACGTAGGTCGTCGCGGCAGTGGAAGAGATCGGGGCAGCAGTTTGATTGGAGGTCGGGGAAGTGGTAGATTTGGTGGAGCTCACGGCGAAAAGACCTCTGGGAGAGGAAGTGGGGCTGGAGGTAGAGGTTTTGGTGGAAGCGCAGGATTTGGCCGTGGACGTGGCCGTGGCCGTGGCGATGGCGGTGGGGTTAGAGGAGGAAGACATGGTGGATCTTCCAAGGATGACTTGGACACCATAGCACTCCCCAAGCAAGATTTTAGAAATTTGGTTCCCTTTGAGAAGAATTTTTACATCGAAAGCCCATCGGTGCGGGCAATGTCTGATCATGAACTTATGGTTTACCGTGCCAGTAGGGAGATCACAGTGCAAGGGCATGACATTCCTAAACCAATTCGAACGTTTCAAGATGCAAATTTTCCTGATTACTGCCTTGAGGTGATTGCCAAATTGGGTTTTGTGGAGCCTACACCAATTCAGGCTCAAGGTTGGCCTATGGCTCTGAAGGGTAGGGATTTGGTTGGCATTGCGGAGACTGGCTCAGGAAAAACACTCGCGTATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTGGTACAAGGTGAAGGTCCTATTGTCTTAGTTCTAGCTCCAACTAGAGAGTTAGCTGTTCAAATTCAGGAAGAAACTGTAAAATTTGGTTCTCGAGCAAATATTAGAAGTACTTGTGTCTATGGTGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAAAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGCCTAATAGATATGTTGGAAGCTCAGCACACAAATCTGCGAAGAGTGACTTACCTTGTGTTGGATGAAGCTGACCGAATGCTGGACATGGGCTTTGAACCTCAGATAAGAAAAATTGTTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACTCTGGCAAGACAGTTTCTACGCAATCCATATAAGGTAATTATTGGATCAGCAGATTTGAAAGCAAATCAATCTATAAATCAGGTTGTTGAAGTTTTAACAGAAGTGGAGAAATATAATAGATTGATCAGACTGCTTAACGAGCTGATGGATGGGAGTCGAATTCTTATATTTATCGAGACAAAAAAGGGTTGTGATCAAGTTACAAGACAATTGAGGACGGATGGCTGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTCGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGATCAATTATGATTTTCCCTCAAGCCTGGAAGATTATGTCCACAGAATTGGTCGAACAGGTCGTGCAGGGGCTAAAGGAACTGCCTTCACCTTTTTCACTCATGCAAATGTCAAGTTTGCCCGGGATTTGATCAAGATCTTGCAAGATGCTGGCCAGATCGTGAGTCCTGCTCTATCTTCATTGGCTCGGTCAGCTGGTTCTGGTCAATTTGGATCTGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAACCGAGGTCACATATCAGGATCCAATTCCATTCCTCTGGGTTCAAAGAGGCCTTGGTAG 2007 0.4808 MNPHDNRYADSTSYRNRRSDLLGSMPPMVPPVIGGASSSYGRGGPASYGPSPVGYNMGGRGAGSALGAAPAPNYSELPSFMPPPGGFDIGRGGVSSQRGFGGRLGNGPVGDRKDDVGRRGSGRDRGSSLIGGRGSGRFGGAHGEKTSGRGSGAGGRGFGGSAGFGRGRGRGRGDGGGVRGGRHGGSSKDDLDTIALPKQDFRNLVPFEKNFYIESPSVRAMSDHELMVYRASREITVQGHDIPKPIRTFQDANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLVGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEETVKFGSRANIRSTCVYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSADLKANQSINQVVEVLTEVEKYNRLIRLLNELMDGSRILIFIETKKGCDQVTRQLRTDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHANVKFARDLIKILQDAGQIVSPALSSLARSAGSGQFGSGGNFRSRGRGGYGNRGHISGSNSIPLGSKRPW 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00013 668 MobiDBLite consensus disorder prediction 172 192 - -
Pral4782g00013 668 Pfam Helicase conserved C-terminal domain 477 587 IPR001650 -
Pral4782g00013 668 Gene3D - 220 455 IPR027417 -
Pral4782g00013 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 278 453 IPR014001 -
Pral4782g00013 668 FunFam ATP-dependent RNA helicase RhlB 457 630 - -
Pral4782g00013 668 CDD SF2_C_DEAD 466 596 - -
Pral4782g00013 668 SMART helicmild6 506 587 IPR001650 -
Pral4782g00013 668 MobiDBLite consensus disorder prediction 630 668 - -
Pral4782g00013 668 Pfam DEAD/DEAH box helicase 271 442 IPR011545 GO:0003676|GO:0005524
Pral4782g00013 668 MobiDBLite consensus disorder prediction 1 26 - -
Pral4782g00013 668 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 399 407 IPR000629 -
Pral4782g00013 668 SMART ultradead3 266 469 IPR014001 -
Pral4782g00013 668 MobiDBLite consensus disorder prediction 87 192 - -
Pral4782g00013 668 FunFam probable ATP-dependent RNA helicase DDX17 209 456 - -
Pral4782g00013 668 CDD DEADc_DDX5_DDX17 259 453 - -
Pral4782g00013 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 626 IPR001650 -
Pral4782g00013 668 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 226 626 - -
Pral4782g00013 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 607 IPR027417 -
Pral4782g00013 668 Gene3D - 456 629 IPR027417 -
Pral4782g00013 668 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 247 275 IPR014014 GO:0003724
Pral4782g00013 668 MobiDBLite consensus disorder prediction 108 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00013 Pral-Chr4782 99891 104443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00013 244 607 Eukaryotic Initiation Factors Gene Family AT3G19760 36.264 2.60e-72 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00013 K12823 - qsu:112035669 904.049