Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00010 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAACTGAGAAAGGGTCTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATTACATTACCAGATATGGCGTTGGCTGCTGGAGTTCTATTCCCAAACTCGCTGGGTTGCAAAGATGCGGAAAGAGTTGTAGGTTGAGATGGATTAATTATCTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAACAAGAAGAAGATCTCATACTCAGCCTTCACGAAGTTCTTGGCAACAGGTGGGCTCAGATTGCAGCACAGTTACCAGGAAGAACAGATAATGAGATAAAGAACTTTTGGAATTCAAGTCTGAAGAAGAAGCTGCTGAAGCAAGGGATTGACCCAACCACACACAAGCCTCTAATTATTTCAGAACCTCATCATCAATCGTCAATCAAGGAGGAGAACAAAGGTCTCACAGATTCAGAGACAGTACTATTGCCATCTATACAGATTCCATTCTCAGTCGTCTCAGCTCCAACAACATCCTTGGGCTTCTCATCATCATCACAAGGATCATCAGTACTTGCAGGAAGTGATTCCAACCAGTTTGATCAGAATAATAGTGGTTATGACCCATTGGCCTTATTGGAGTTCCAAATGGCTGGTTTAAACCAATCCTCTTCTGGGTTCGGATCATTCAATATGTCCTCAATAATGCCAGGTCTGATCACAAATTCCATGGCAGAGTTCTCATCAGAAAACAATTCGGGTTCGAGAATCAGTTCAAGCAATAGCTTGAGCAGCTATATTCAAGGAGGAGGGTGTCATCAGATAAGTAACAGTTTAGCGATGGATCCATTGTTGTATCAGTTTCATGAAGCGAATGGTATAAAGAACGAAGAAGATTATCAGTTGATGAAGACGACGACGACGACAGGGTCGTCGTGGGAAGAAGATGGCCAGCTTCTGAATCAAACCTCCATAGATTTCACCGCCAACTATCCGTTAACGTCACTTTCAGAAGATCTAACGCCCGCGAATTTGATGCTTTCCACACCATATGCAGGTCCAGGTGAAGAGAGTGGATCCAAAGTCTAA 1065 0.4347 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRYGVGCWSSIPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLILSLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLLKQGIDPTTHKPLIISEPHHQSSIKEENKGLTDSETVLLPSIQIPFSVVSAPTTSLGFSSSSQGSSVLAGSDSNQFDQNNSGYDPLALLEFQMAGLNQSSSGFGSFNMSSIMPGLITNSMAEFSSENNSGSRISSSNSLSSYIQGGGCHQISNSLAMDPLLYQFHEANGIKNEEDYQLMKTTTTTGSSWEEDGQLLNQTSIDFTANYPLTSLSEDLTPANLMLSTPYAGPGEESGSKV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00010 354 SMART sant 13 63 IPR001005 -
Pral4782g00010 354 SMART sant 66 114 IPR001005 -
Pral4782g00010 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pral4782g00010 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral4782g00010 354 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pral4782g00010 354 FunFam MYB transcription factor 11 67 - -
Pral4782g00010 354 CDD SANT 70 112 IPR001005 -
Pral4782g00010 354 CDD SANT 17 61 IPR001005 -
Pral4782g00010 354 Gene3D - 11 67 - -
Pral4782g00010 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pral4782g00010 354 Gene3D - 68 146 - -
Pral4782g00010 354 FunFam MYB transcription factor 68 129 - -
Pral4782g00010 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral4782g00010 354 PANTHER MYB DOMAIN PROTEIN 55 1 266 - -
Pral4782g00010 354 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pral4782g00010 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00010 Pral-Chr4782 81286 83315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00010 1 176 MYB Transcription Factor Family AT1G57560 64.773 1.14e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral4782g00010 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00010 K09422 - gmx:100799243 321.627