Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4782g00007 ATGGCGTCGTCGTCGTCGTCAAGCCCTTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCTTGCCAGGTTGCATCTTCGCTCCTTACTTCCCACCGGAAGAGCCTCAGAAATTCGCCAACGTTCACAAGATATTCGGTGCCAGTAACGTCACTAAGCTCCTCAACGATCTCCTTCCTCACCAGCGAGAAGACGCCGTCAACTCTCTCGCCTACGAAGCCGAGGCTCGCGTCAAAGATCCCGTTTACGGCTGCGTCGGCGCCATCTCCTTCCTCCACAGGCAGGTCCAGAGGCTTCAGAAGGAGCTCGATGCGGCTAACGCCGTTCTGCTTCGTTTTGCCTGCGACGACATCGCGTCTCAGCCTGGATTGACCCCTTCAGTTCAACCATGCCTGCCTCAACGACAAAGGCCTGTGAACTTTGCCTCTGATGACTTTTACCCGCAATCTTCGAGCAGTTATTCTCTTCCTTGGGCTGATTCTTCTTCGGACGCCTTCAATAATGGAGGAGGTAATTTGTGA 531 0.533 MASSSSSSPYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNDLLPHQREDAVNSLAYEAEARVKDPVYGCVGAISFLHRQVQRLQKELDAANAVLLRFACDDIASQPGLTPSVQPCLPQRQRPVNFASDDFYPQSSSSYSLPWADSSSDAFNNGGGNL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4782g00007 176 Coils Coil 92 112 - -
Pral4782g00007 176 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Pral4782g00007 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 136 - -
Pral4782g00007 176 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4782g00007 Pral-Chr4782 43138 45271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4782g00007 1 141 AS2 family AT5G63090 76.712 2.53e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral4782g00007 LOB 2.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4782g00007 - - pvy:116142270 258.07