Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral477g00001 ATGAGCGATTGGATGGGGTTTTCTCTGACTCCACACTTGAGGATTGATGAAGTATATGGGAATGGTAGAGAAAACCAAGCAGAACACCGTGGAGGCTATCCTCCTTCTCATCCTCGCTTGTCGGTTATGCCTTTGAGATCAGATGGCTCTCTCTGTGTTGCTGACCCTTTTAGGCACTCTGGTGCAGCTGAAGAGTGGAGGTATGATAATGGAGTAGTAGGAGGAACCTCCAATGAAAAAGGTCCAAAGCTTGAAGATTTCTTGGGTTGTTACTCGAACACGTCTGATATTGCTGAAACCAAAGTGTATTGCCAAGGCAGTACACAACAAGAAGATCAAGACCGAGAGCATAACCAGAGCCAGAACCAGGACATTTCTAGCAGGATCAATGTGAATGTGGCCCCAAGCTTCAGCACCAACACTGAGATGGAAACTAATGGGGAAAATTTCGCAAACCCTCCTTCCTTAATCCAATCTTTTCATGCATACAATGATGGTAACCCGCGAGCTGTAATCCCAAGTAACGGCATGTACAAGTCCTGGTTGGCTCAATCTCAATCTTCTGCTGAAGTAAATGGTTATAACTACCAATCTCTAGCCCTAACTATGAGTCCTAGTGTACCAAACACTCTTTGTGGTGCAGTTTCACCGGTTCAAGTGGAAGATGATGCTCGTAAAAGGCCAATCACAAAATCTCTTGCTGCTAGAGAACCCGTGCCTCGCAAATCTATTGATACCTTTGGTCAAAGAACATCTCAATATCGAGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTGTGGGATAATAGTTGCAGGAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGGTGGTTATGATAAAGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCGCTCAAGTATTGGGGCCCAACCACTCACATAAATTTCCCTTTAAGCAGTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACGAGGCAAGAATTTGTGGCCAATTTGAGGAGGAAGAGCAGTGGATTTTCAAGAGGTGCTTCTGTGTATAGGGGCGTGACAAGACACCATCAACATGGAAGGTGGCAAGCTAGGATCGGTAGAGTTGCAGGAAACAAAGACTTGTATCTCGGTACATTTAGCACACAAGAGGAAGCCGCAGAAGCATATGATATTGCTGCAATTAAGTTCAGGGGAACTAGTGCTGTGACCAACTTCGATATAAGCAGGTATGACGTGAAGAGAATATGCTCCAGCTCGACCCTCATTGCAGGAGATCTGGCAAAGAAGTCTCCGAAAGACTCAGCTCCGGGCAGTGTGGCCACCACAACGGACGACTTCAATTCTAATGCATCAACGTCATTAGCGACGGCGGCTCATCGGCAGCAGCCACAGCCCTTTTTGGCTGTAACAAATGGTGAGCACTCTTCTGATGAGTTAGCCAGCATGGTTTGGAATGATGACGGGAACCCCAACGAGAAACAGGTCAATGATCACAGTATTTCCGAGAACGGCACGAATAATAATGCTAAGAACGCGTCAAACTCGGAAGAAAGTCCCAAGTGTTCTGTGGGAATGGGAAATGAGTTTGGGGTGAATGGTTCGGAGTTTGGACCCGGGTTCTTCTCGTTGCAGGGACCAAAGTATGGTGATGATGATGATGGAAACAACGACAACGGTGATGATAACTCGAATAATGACATTCGCATTGGGAACATGGGTCTGGCTCATCAAGTTCCTATGTTTGCTTTGTGGAATGAATGA 1773 0.4597 MSDWMGFSLTPHLRIDEVYGNGRENQAEHRGGYPPSHPRLSVMPLRSDGSLCVADPFRHSGAAEEWRYDNGVVGGTSNEKGPKLEDFLGCYSNTSDIAETKVYCQGSTQQEDQDREHNQSQNQDISSRINVNVAPSFSTNTEMETNGENFANPPSLIQSFHAYNDGNPRAVIPSNGMYKSWLAQSQSSAEVNGYNYQSLALTMSPSVPNTLCGAVSPVQVEDDARKRPITKSLAAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSSYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKKSPKDSAPGSVATTTDDFNSNASTSLATAAHRQQPQPFLAVTNGEHSSDELASMVWNDDGNPNEKQVNDHSISENGTNNNAKNASNSEESPKCSVGMGNEFGVNGSEFGPGFFSLQGPKYGDDDDGNNDNGDDNSNNDIRIGNMGLAHQVPMFALWNE 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral477g00001 590 ProSiteProfiles AP2/ERF domain profile. 253 316 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 MobiDBLite consensus disorder prediction 431 450 - -
Pral477g00001 590 CDD AP2 252 318 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 FunFam AP2-like ethylene-responsive transcription factor ANT 252 318 - -
Pral477g00001 590 ProSiteProfiles AP2/ERF domain profile. 352 410 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 Gene3D AP2/ERF domain 352 412 IPR036955 GO:0003700|GO:0006355
Pral477g00001 590 Gene3D AP2/ERF domain 252 318 IPR036955 GO:0003700|GO:0006355
Pral477g00001 590 Pfam AP2 domain 351 402 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 Pfam AP2 domain 253 308 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 CDD AP2 351 412 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 MobiDBLite consensus disorder prediction 485 572 - -
Pral477g00001 590 SUPERFAMILY DNA-binding domain 252 318 IPR016177 GO:0003677
Pral477g00001 590 PRINTS Ethylene responsive element binding protein signature 392 412 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 MobiDBLite consensus disorder prediction 491 525 - -
Pral477g00001 590 SUPERFAMILY DNA-binding domain 351 412 IPR016177 GO:0003677
Pral477g00001 590 MobiDBLite consensus disorder prediction 104 130 - -
Pral477g00001 590 FunFam AP2-like ethylene-responsive transcription factor 351 412 - -
Pral477g00001 590 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 80 497 - -
Pral477g00001 590 SMART rav1_2 253 322 IPR001471 GO:0003700|GO:0006355
Pral477g00001 590 SMART rav1_2 352 416 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral477g00001 Pral-Chr477 8672 11920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral477g00001 1 441 AP2-EREBP Transcription Factor Family AT1G72570 49.684 1.54e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral477g00001 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral477g00001 K09285 - gmx:100805489 747.273