LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4776g00011	ATGGAGGGTAGCGATGAGCAAATGAATCCTAATGATATCAAAGCACATGGAGACACCAAAATGGAGCCACCGACAAGACAAGCTCTGGATCCATTTGCCAAACTGGAGGAAATAGAAACAAGGGAAACATTTGATTTTCACAAAGGAGAAAAAGTGGAGCCATTTGTGAAAGCAGAGCCATTCGGTCTTCCCAAACCAAAGCGGCCAAATCCTCCCAGGATAGAAACAAACCCACATTTTTTTGGCATTCCACTGAGTGAACTGAGGCCTATATTGCCACTAAAGGTAAGCCGGATAAGAGATTTTATCAGGCTACTGTTGAATTATCCCATGAGAACAGTGCACGATAGCAAACTCAAGGCTTGGATTCAAGAAGCTTCAAGAAGGAGACATTCTTTGGATGATTTGAACCGCCTTCTCAATCAGAAGCCTCTTGAATGCTTCCAAGGCCTTTTACCAGTGTACGTACTGAAGAGCGTGGAAAGGGGTTGGAGTCCCAACTATATTTATTCTGACGGGACACCAGAAGATATTCTCAATTTATCTGTGAATCTTGCTGTGGATCAATTGGTTCAAACTTTATTGTCTGAGGATGATCATGTACGAAACATTCACCATGTCCTGTTCTCTACAAGAGATGCAACTGAAAAAAGACTAGTTAAGAAAAAAATAGAATCAGTCTTGAAAGACAAGGAAATTCTACTTCGCCTTCATGAAACCTTCTCCAGAATCTTACTCATCGACGCCTCAGATTACCAAGGTCTTGCTGCGGAGATACATGTTCAACAGCAGATAGCTCAACAATTTCATCTTCCATTGATAGAAGGCAATGACGATTTGCTTAAAACAAGCATTGAGAAAGAGATGTCAAGAAAAAAATACTTGGTGCTTTTGGTGGATGGAGAAGCCAAAGAGCCTCTTGATCCTTGGAAAGTGGGTTTTCCTGAAGAACTTGCAGGAGTTGTGGTGTGCATTACCACTGAATCTTCGAAGCGGGCTAATAGTGAATTAACAGTGGCAATGGCTCTGAATATCAACACAACGGATCACTTATTGCCGTGGGAAGTTATCTGTACAAACATCGGAATTCCGATTTTACCATTATCCAGCGCTGAGAGAATGGCTGTGCGTATAGTTAAAGAATGCGGTGCTCATCTTCTTGCCGGTGTCATTGTGGCAAGATTACTGAGGAAGGAAATATATGCTTCACAATGGGAACTTGCCTTGTTCAAATTGAGTTCGCTTCATCCTTCCTATGACATCGGTACATTTCAAGGCCAGAGCAGTGTCTTAAATAAAGCATTCATAAACTTCATCTGGCATGATTTAAGTAAGACACAGAAATATTGCCTTACATCATGCTTATTCATTTCTAAATTTGGGAAGCCAGAAAATGAGTTGGTAAATTATTGGATTTCTTCTCGATTAGTGGGTGCTAGAGAAGCCAAGCATAATCTGACAGAGCTTGTGGACCGTTTTGCCTTGTTGCAACTAAAGGACAAGAAGTCAAGGTATATTCAAATTCCACAAGAGATATATGATATCTTGCAATTATTAAACAGTCAGAATCCTTTGATCATGAAAAAATCTGAGTTGGGGTTGGTTGAACCACCAAAGAGTGAGCTATGGCATAGTGCTATATATATTGACTTGGCAGACAATAAGCTGTTTGAGCTACCTTTTTCCCCGGATTGTCATGAACTCAAAGTGTTAAAGTTGCACAACAATGCTGATTTGACAAAAATCCCACCCCATTTCTTCTTTAAAATGCCTCTACTTTGCGTCTTGGATTTGTCCTACACTAGTATTAGAGAATTACCGAACTCCTTTTTTGAGTTGGAGCAACTTAGGGAACTCTATATGAAATCTTGTGAATGCTTCATGAAACTACCCTCAGAGGTTGGGAAATTGAAGAATCTAGAGAAGATTGACCTTGACAAGACTCAAATTACACATTTGCCAAAAGAGATCCAGGAATTGACCAACCTCCAAAGTTTGACTCTTTGTTTGTACGAGTATCGTGGCAAGAAAAGTAAAGAATATACCAGCTCAACAATTATTCCTTCTGGGGTGATTTCAAAGCTTAAAGGCCTAAAACATTTAAGCATTGACGTAAACCCCGATGATGAGCGATGGGAAGAGAATTTGCAAGTCATTCTACCAGAACTCTGGGTATTAGAATGCTTGCAAACTATTAGTTTTTACATTCCAATGATAGAACTTTTATATCTCATGCCTGCACGCATTTTTGAGCTTGATTTTAGATTCATTATTGGCAGACATATGTCAAGGATCATTTCAGGTACACTGCCCACAGCTGAAGAAAAATTTAAACAAAGTGAGCGTAGCATAAAGTTTGTGAAAGGTGTTGATGTCCCTTATGAAATAGCAAGTGTTGTTAGACATAGCAAGGCTTTATTTTTAGACAGACACATGACCATCAAGGATCTCTCAAAATTTGGCATGACGAGTATAGAGCAATTACAGGTGTGTATATTGGCTGAATGTAAGGAGATGCAAACAATTATTGATGGAAGATGCTCGAGCAGTAAAGATATACTTCCCCTTAACAACTGTTTCACCTTGGATTTTCTGGGCAACCTTTCACTCTTGAAGGTGCTTGTAGTTAAAGATTGTCCAAAAATAGGTGCTTTAATAACTTATGGACCAACCAAACCTGGAGCAGGCACTTTCCTCCCAAAATTAAGAACAATAGCACTTCTCCATCTTCCTGAATTGATCAGCATTTCTAATGGATTACACATGGGTCCAAGTTTAGAAAACATAGGAATTTATAATTGCCCAAAACTTCAGAGGCTTTCCAAAATGGAACTGTCAAGTCAGAATTTGAAAGCCATCAAAGGAGAAGCCAAGTGGTGGAAAGCATTGATGTGGAGTGAAGCAGAATGGGGAACAGTTGGCCGGCCATCTGTTTTTGATTGCATCTTTTCTCCAATTAATAAACAGGATGACATTATGAGTCAACTAGAGTTGGATGATGATATTGATGACTGTCCAGCGATAGGGGGGATAGTGTGTGAGCCACTGAAGTCTTCCAGTGGCAAGGTCTCCGAGGATATGAGGTCTATCATAACAAATGAGATAGTGGTTGAGCCTCCACAGTCTTCCGGAAGCAGGGTCTCCAAGTACAAGGGGACCAAGGAAGCAAGATGGACGATAATATCTCCGTCTCTTGACGATGGGTTTAGTTGGAGAAAATGTGGCGAAAAAAAAATTCTTAATTCCAAAATTTCAAGAGAATATTACAGATGCACTCATAAAAATGTCGAGGGTTGCCGAGCTTTCAAACAAGTGCAGAGAGATGACAATATTCCTGACCTTTACAATATCACCTACCATGGTCATCACACTTGCAGACAAATCTACAGGGAAACAGAATCATCCATGAACAATCACGTCGACTTAAGGTCTCAATCTTGGGTAGATGATGATGATGATATTTGCCATCATCCAGCGTCACCGCCTTCTGGTTTGAGCATATTCGCGAATGAAAAGCATATTGCCAAGCGAACCAGCAGGGGGGGCGACACTTGCTTACCAGCCTCCTATGCGATAAATTCTACTCTAGCTGACGGTATAAACCAGATGGCCGTGCCAACATGCGATTCAAATCTTTCAATTTTGTCTATGGGACTTGAGATTGAACCTTCAGCGAGTATTGGCCCAGATATAATTGAACTGGCTTCTCCCAGTCATCCAGGAATTTACAGTTCCCCGTTTGAGGAATTTGACGACATCGCCTGCTGA	3768	0.4063	MEGSDEQMNPNDIKAHGDTKMEPPTRQALDPFAKLEEIETRETFDFHKGEKVEPFVKAEPFGLPKPKRPNPPRIETNPHFFGIPLSELRPILPLKVSRIRDFIRLLLNYPMRTVHDSKLKAWIQEASRRRHSLDDLNRLLNQKPLECFQGLLPVYVLKSVERGWSPNYIYSDGTPEDILNLSVNLAVDQLVQTLLSEDDHVRNIHHVLFSTRDATEKRLVKKKIESVLKDKEILLRLHETFSRILLIDASDYQGLAAEIHVQQQIAQQFHLPLIEGNDDLLKTSIEKEMSRKKYLVLLVDGEAKEPLDPWKVGFPEELAGVVVCITTESSKRANSELTVAMALNINTTDHLLPWEVICTNIGIPILPLSSAERMAVRIVKECGAHLLAGVIVARLLRKEIYASQWELALFKLSSLHPSYDIGTFQGQSSVLNKAFINFIWHDLSKTQKYCLTSCLFISKFGKPENELVNYWISSRLVGAREAKHNLTELVDRFALLQLKDKKSRYIQIPQEIYDILQLLNSQNPLIMKKSELGLVEPPKSELWHSAIYIDLADNKLFELPFSPDCHELKVLKLHNNADLTKIPPHFFFKMPLLCVLDLSYTSIRELPNSFFELEQLRELYMKSCECFMKLPSEVGKLKNLEKIDLDKTQITHLPKEIQELTNLQSLTLCLYEYRGKKSKEYTSSTIIPSGVISKLKGLKHLSIDVNPDDERWEENLQVILPELWVLECLQTISFYIPMIELLYLMPARIFELDFRFIIGRHMSRIISGTLPTAEEKFKQSERSIKFVKGVDVPYEIASVVRHSKALFLDRHMTIKDLSKFGMTSIEQLQVCILAECKEMQTIIDGRCSSSKDILPLNNCFTLDFLGNLSLLKVLVVKDCPKIGALITYGPTKPGAGTFLPKLRTIALLHLPELISISNGLHMGPSLENIGIYNCPKLQRLSKMELSSQNLKAIKGEAKWWKALMWSEAEWGTVGRPSVFDCIFSPINKQDDIMSQLELDDDIDDCPAIGGIVCEPLKSSSGKVSEDMRSIITNEIVVEPPQSSGSRVSKYKGTKEARWTIISPSLDDGFSWRKCGEKKILNSKISREYYRCTHKNVEGCRAFKQVQRDDNIPDLYNITYHGHHTCRQIYRETESSMNNHVDLRSQSWVDDDDDICHHPASPPSGLSIFANEKHIAKRTSRGGDTCLPASYAINSTLADGINQMAVPTCDSNLSILSMGLEIEPSASIGPDIIELASPSHPGIYSSPFEEFDDIAC	1255

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4776g00011	1255	Gene3D	WRKY domain	1051	1120	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral4776g00011	1255	PANTHER	NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED	220	951	-	-
	Pral4776g00011	1255	SUPERFAMILY	L domain-like	543	943	-	-
	Pral4776g00011	1255	Pfam	WRKY DNA -binding domain	1066	1126	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4776g00011	1255	SMART	LRR_typ_2	637	660	IPR003591	-
	Pral4776g00011	1255	SMART	LRR_typ_2	590	613	IPR003591	-
	Pral4776g00011	1255	ProSiteProfiles	WRKY domain profile.	1065	1123	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4776g00011	1255	Gene3D	Ribonuclease Inhibitor	527	746	IPR032675	-
	Pral4776g00011	1255	Gene3D	Ribonuclease Inhibitor	798	958	IPR032675	-
	Pral4776g00011	1255	MobiDBLite	consensus disorder prediction	7	23	-	-
	Pral4776g00011	1255	Pfam	NB-ARC domain	259	413	IPR002182	GO:0043531
	Pral4776g00011	1255	SMART	WRKY_cls	1065	1127	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pral4776g00011	1255	SUPERFAMILY	WRKY DNA-binding domain	1063	1126	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pral4776g00011	1255	MobiDBLite	consensus disorder prediction	1	25	-	-
	Pral4776g00011	1255	Pfam	Leucine rich repeat	567	624	IPR001611	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4776g00011	Pral-Chr4776	288466	294896	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4776g00011	1014	1167	WRKY Transcription Factor Family	AT3G56400	34.659	7.97e-20	89.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pral4776g00011		NB-ARC	2e-05	CL0023

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4776g00011	-		-	pcin:129285668	1244.95