Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00233 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACTTTTGCAAAGAGAAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCTCTAGCAGCATGCTCAAAACCCTGGAAAGGTACCAAAAGTGCAGTTATGGTGCAGTGGAAGTCAGCAAGCCTGCCAAAGAGCTCGAGAATAGCTACCGTGAGTACTTGAAGCTGAAAGCCAGATTTGAATCTCTCCAAAGGACTCAGAGAAACCTTCTAGGGGAGGACTTGGGCCCACTGAATACCAAAGAACTTGAGCAGCTCGAGCGACAACTGGACTCATCTCTCAAGCAAGTTAGGTCCACAAAGACACAATTCATGCTGGACCAACTATCTGATCTTCAAAATAAGGAGCAAGTTTTAGCAGAAGCAAACAGAGCTCTGACTATGAAGCTGCAAGAGATTAATGCAAGAAACCACTTCAGACAGTCATGGGAAGCTGGTGATCAAAGCATGCCATATGAGACTCACAATCCTAACTCTCAGGGTTTCTTTCAGCCTCTGGAATGCAATCCCACGTTGCAGATGGGTCCTGAATACAGGTACAATCCAGTAGCTTCAGATCAGATTGCTACAAGTAGTCAAGGCCAGCAAGTGAACGGCTTCATTCCAGGGTGGATGCTCTGA 747 0.4699 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQVLAEANRALTMKLQEINARNHFRQSWEAGDQSMPYETHNPNSQGFFQPLECNPTLQMGPEYRYNPVASDQIATSSQGQQVNGFIPGWML 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00233 248 Coils Coil 125 145 - -
Pral4774g00233 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 Coils Coil 85 108 - -
Pral4774g00233 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4774g00233 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Pral4774g00233 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Pral4774g00233 248 FunFam MADS-box transcription factor 1 13 88 - -
Pral4774g00233 248 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pral4774g00233 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 Coils Coil 154 174 - -
Pral4774g00233 248 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral4774g00233 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4774g00233 248 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00233 Pral-Chr4774 1341777 1348916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00233 1 248 MADS-box Gene Family AT5G15800 74.525 2.08e-127 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4774g00233 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00233 K09264 - gmx:100788427 432.565