Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00232 ATGGGGAGGGGAAGAGTGGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTCACTTTTGCAAAGAGAAGAAATGGCCTTCTCAAGAAAGCCTATGAGCTCTCTGTGCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTTTATGAGTTCTGCAGCAGCTCTAGCATGCTCAAAACCCTGGAAAGGTACCAAAAGTGCAGTTATGGTGCAGTGGAAGTCAGCAAGCCTGCCAAAGAGCTCGAGAATAGCTACCGTGAGTACTTGAAGCTGAAAGCCAGATTTGAATCTCTCCAAAGGACTCAGAGAAACCTTCTAGGGGAGGACTTGGGCCCACTGAATACCAAAGAACTTGAGCAGCTCGAGCGACAACTGGACTCATCTCTCAAGCAAGTTAGGTCCACAAAGACACAATTCATGCTGGACCAACTATCTGATCTTCAAAATAAGGAGCAAGTTTTAGCAGAAGCAAACAGAGCTCTGACTATGAAGCTGCAAGAGATTAATGCAAGAAACCACTTCAGACAGTCATGGGAAGCTGGTGATCAAAGCATGCCATATGAGACTCACAATCCTAACTCTCAGGGTTTCTTTCAGCCTCTGGAATGCAATCCCACGTTGCAGATGGGTCCTGAATACAGGTACAATCCAGTAGCTTCAGATCAGATTGCTACAAGTAGTCAAGGCCAGCAAGTGAACGGCTTCATTCCAGGGTGGATGCTCTGA 744 0.4691 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKELEQLERQLDSSLKQVRSTKTQFMLDQLSDLQNKEQVLAEANRALTMKLQEINARNHFRQSWEAGDQSMPYETHNPNSQGFFQPLECNPTLQMGPEYRYNPVASDQIATSSQGQQVNGFIPGWML 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00232 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pral4774g00232 247 Coils Coil 153 173 - -
Pral4774g00232 247 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Pral4774g00232 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 Coils Coil 124 144 - -
Pral4774g00232 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 FunFam MADS-box transcription factor 1 13 87 - -
Pral4774g00232 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 Coils Coil 84 107 - -
Pral4774g00232 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4774g00232 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 182 - -
Pral4774g00232 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00232 247 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pral4774g00232 247 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00232 Pral-Chr4774 1341777 1348916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00232 1 247 MADS-box Gene Family AT5G15800 74.809 7.41e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4774g00232 K-box 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00232 K09264 - gmx:100788427 437.187