Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00231 ATGGGGAGAGGTAGGGTTCAGTTGAAGCGGATCGAGAACAGTTCGACCAGGCACGTGACGTTCTCAAAGCGCAAGGGCGGGCTGCTTAAGAAAGCCAATGAAATCTCAGTGCTCTGCGATGCTCAGGTCGCTTTGATTCTCTTCAGTTGCAGGGGCAAACTCACTGAGTTTAACTCTCCGTCCTCCAGCATGGATAGCATTCTGGAGCGATACGAGAGATGTTCGCACTCAGAACAACTCGCTGGAAGTAACAACGATTCCCAGGGAAATTTGTCTTTGGAGTTATTCAAGCTCACTACTAGGGCTGAAGTTTTACAGAAGAACATAAGGAATTACGAAGGAGAGGATCTGGATCCCTTGAGTTTGAAGGAGCTTCAGAGTCTGGAACACCAGCTTGAAAATGCACTGAAGCGCATCAGAACCAAAAAGAACCAAATCATGATAGAATCCATCTCAGAGAAGCATAGAAAGGAAAAGGCATTGAAGGATGAGAACAACATGCTAGCAAAGAAGTTGAAGGAGAAGGAGAAGTCACTGACAAATGGCGTGGGTCCCCGAAGTAGGCAGCAAACCCTACGCCAATGTCCATTCAACTTCAACGTTTCTCCACCGCAGCTACCACCGCCACCACCGCCACCTACTCTAACTCTCGGTGGAGCTTGCGGAGAAGGAGGAGCGATGTTGCAAGGGGATGATGACGCTGAAGCTGAAGCTGAAGCTGGACCCAATAACAGCGTCGTCATGCCACCTTGGATGATGTTTCATCACATGCCTAGCTCTTACATTTGA 789 0.4867 MGRGRVQLKRIENSSTRHVTFSKRKGGLLKKANEISVLCDAQVALILFSCRGKLTEFNSPSSSMDSILERYERCSHSEQLAGSNNDSQGNLSLELFKLTTRAEVLQKNIRNYEGEDLDPLSLKELQSLEHQLENALKRIRTKKNQIMIESISEKHRKEKALKDENNMLAKKLKEKEKSLTNGVGPRSRQQTLRQCPFNFNVSPPQLPPPPPPPTLTLGGACGEGGAMLQGDDDAEAEAEAGPNNSVVMPPWMMFHHMPSSYI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00231 262 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4774g00231 262 Coils Coil 122 145 - -
Pral4774g00231 262 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pral4774g00231 262 Coils Coil 158 178 - -
Pral4774g00231 262 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Pral4774g00231 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Pral4774g00231 262 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4774g00231 262 Coils Coil 95 115 - -
Pral4774g00231 262 MobiDBLite consensus disorder prediction 197 249 - -
Pral4774g00231 262 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral4774g00231 262 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4774g00231 262 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00231 Pral-Chr4774 1329924 1335048 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00231 1 223 MADS-box Gene Family AT1G26310 49.372 1.93e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4774g00231 K-box 4.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00231 K09264 - sly:104645706 239.58