Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00203 ATGCTGAAAGAAGGCAGTGGCAATGGCGTCAGCAGTAATAATAGCTGGGCACGTATCTGTGACACCTGCCGCTCTGCTCCCTGTGCTGTCTACTGCCGCGCCGACATGGCTTACCTCTGTACCGGCTGCGACTCCCGCATCCACGCAGCCAACCGCGTCGCCTCCCGCCACGAGCGAGTCTGGGTTTGCGAGGCTTGTGAACGAGCCCCCGCTGCGTTTCTCTGCAAAGCCGACGCTGCCTCCCTCTGCTCCGAATGCGACGCCGACATCCACTCCGCCAATCCCCTGGCCAGCCGTCACCACCGCGTCCCCATTCTCCCCATCCACGGGCCTCCTTCCCCGGGGTCTGCTCCTGAGGGGGATGATGGTTTTCTAGCTCAAGGGGGCGATGAGGCGGAGGAGGAGGAGGTTGTTGATGAAGAGGATGAAGACGAGGCTGCCTCCTGGTTGTTGCTGAATCCTGTCAAGAACAACAACCACAACAACACTAGCAATTCCAACACCAACAACAACAATCAGAGCAATGGATTTTTGTTTGGTTCTGGGGAGGTTGATGATTATTTGGACCTCATGGATTGCAATTCATGTGCTGAAAATCAGTTGACCGATCATTACAATCAGCAGCAACATTATGGTGTTCCTCAGAAGAACTATGCCGGTGACAGTGTTGTTCCGGTTCAGCAGCAGCAGCAGCATTTCCAGTTGGGTTTGGACTTTGATTCATCAAGAACTGACTACAGTGCTTTCAACGGTTCCGTTACTCAAAATGTTTCGATGTCGTCAATAGATGTTGGCATTGTACCGGAATCAACTATCAGCGATGGCTCGATTTCCCATTCAAGACCTCCAAAAGGGACAATTGACCTTTTCTCTGGGCCTCCAATTCAGATACCTTCGCAGCTCAGTCCGATGGACAGGGAGGCTAGGGTGTTAAGATACAGAGAGAAGAAGAAGACAAGAAAGTTTGAGAAGACAATAAGGTATGCCTCTAGGAAGGCTTATGCAGAGACCAGACCTCGCATCAAAGGTCGATTTGCAAAGAGAACAGAGGTAGAAGCTGAAGTGGACCAGATGTTCTCTACTTCTCTAATGACGGATGCTGGATATGGCATTGTTCCTTCTTTCTGA 1128 0.5151 MLKEGSGNGVSSNNSWARICDTCRSAPCAVYCRADMAYLCTGCDSRIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSECDADIHSANPLASRHHRVPILPIHGPPSPGSAPEGDDGFLAQGGDEAEEEEVVDEEDEDEAASWLLLNPVKNNNHNNTSNSNTNNNNQSNGFLFGSGEVDDYLDLMDCNSCAENQLTDHYNQQQHYGVPQKNYAGDSVVPVQQQQQHFQLGLDFDSSRTDYSAFNGSVTQNVSMSSIDVGIVPESTISDGSISHSRPPKGTIDLFSGPPIQIPSQLSPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTEVEAEVDQMFSTSLMTDAGYGIVPSF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00203 375 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Pral4774g00203 375 MobiDBLite consensus disorder prediction 152 177 - -
Pral4774g00203 375 CDD Bbox1_BBX-like 19 62 - -
Pral4774g00203 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 367 IPR045281 GO:0009909
Pral4774g00203 375 MobiDBLite consensus disorder prediction 126 147 - -
Pral4774g00203 375 Pfam CCT motif 306 348 IPR010402 GO:0005515
Pral4774g00203 375 SMART bboxneu5 15 62 IPR000315 GO:0008270
Pral4774g00203 375 SMART bboxneu5 63 105 IPR000315 GO:0008270
Pral4774g00203 375 MobiDBLite consensus disorder prediction 105 177 - -
Pral4774g00203 375 ProSiteProfiles CCT domain profile. 306 348 IPR010402 GO:0005515
Pral4774g00203 375 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Pral4774g00203 375 CDD Bbox1_BBX-like 62 105 - -
Pral4774g00203 375 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00203 Pral-Chr4774 1182448 1184632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00203 1 375 C2C2-CO-like Transcription Factor Family AT3G02380 56.218 1.68e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pral4774g00203 zf-B_box 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00203 K12135 - qsu:112016332 498.819