Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00143 ATGGGTCGTCGGAAAATCAAGATGGAGATGGTGCAGGACGCAGCGTCGAGGTTGGTGACGTTCTCAAAGCGCCGGAACGGGCTCTTCAAGAAAGCGAACGAGCTAGCAATCCTGTGCGGCGCCGAGCTCGCCATTGTGGTGTTCTCGCCGGGCGGCAAACCTTTCTCCTTCGGCCATCCGTCCGTCGACGTGGTGACTCAGAGGTTTCTCCGGCACCTCCAAGACGAGGACGAGGACAAAGACAAAGACGAGGAGGAGGCGAAATGGCCGAAACTGAACAAGCGGCTAATGAATCTGACGAGGCAGCTGGAGGAAGAGAAGAAAAAGGGCGCGAGGCTGGACAAGGCGATAGAGGAGAAGATGGCCAAGTACGGGCTGGGACCTGAGAGCGGTCCCGATGATCTGAGCAAGCTGGAGGGGTTCAAGCGGTCGCTGGAGAAACTCAGGGAAGACGTGAAGCTGCGGAAGAGAGAAATGGAGGCTGCGTCGTCTTTGCTGGTACTTGCAGAGAAATTACAGTTGAACGAAGAAAATAATGTTGCTGAAAGTGATCATGATGATGATGGGGCCAGTGCTTCGGATGGCGGCGAGATCAAAAATGGAAACTAA 609 0.5484 MGRRKIKMEMVQDAASRLVTFSKRRNGLFKKANELAILCGAELAIVVFSPGGKPFSFGHPSVDVVTQRFLRHLQDEDEDKDKDEEEAKWPKLNKRLMNLTRQLEEEKKKGARLDKAIEEKMAKYGLGPESGPDDLSKLEGFKRSLEKLREDVKLRKREMEAASSLLVLAEKLQLNEENNVAESDHDDDGASASDGGEIKNGN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00143 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4774g00143 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4774g00143 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4774g00143 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pral4774g00143 202 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Pral4774g00143 202 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Pral4774g00143 202 Coils Coil 138 165 - -
Pral4774g00143 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4774g00143 202 MobiDBLite consensus disorder prediction 177 202 - -
Pral4774g00143 202 Coils Coil 89 123 - -
Pral4774g00143 202 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Pral4774g00143 202 PANTHER MADS BOX PROTEIN 3 154 - -
Pral4774g00143 202 MobiDBLite consensus disorder prediction 177 193 - -
Pral4774g00143 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00143 Pral-Chr4774 811994 812656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00143 1 171 Type I MADS-box Gene Family AT2G34440 44.199 3.79e-40 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4774g00143 SRF-TF 4.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00143 - - pcin:129305499 277.715