LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4774g00142	ATGGTTTGGAGAAATCTGGAGCAAATTGGACTCACCCCCAAAGAATTAGGGCATATGGCATTCTCACTTGTCAAAATCTCCTGTTGCCTTCATGTCACTGCCACCTATCTCATAGACCCTGCTATTGTCGGTGGTCCTAGCATGCTTCCGACAATGGGTCCGATGGCTACCTTTTTATTGACCGAAAGGAACTCCCTGCGTTTTGGTAAAGTTGAGCGCGGGGATATTGTCTTGGTGCGGTCACCTGTAAACCCTCGAAATTTATTGACCAAGCGCTTGCTTGGATTGGAGGGTGATAGTGTCACATTTCTCGTCGATCCTAGGAACAGTGATAAATGCGAGACTATAGTGGTTCCTAAGGGGCACGTTTGGGTACAGGGCGATAACATATATAATTCCAGGGATTCAAGACAATTTGGTCCTGTTCCTTATGGTCTTCTTTATGCCAAGGTCTTTTGGAGGTTATGGCCACTTGGAGGTTTTGGACCCCTGGGCAAAAACTGA	504	0.4663	MVWRNLEQIGLTPKELGHMAFSLVKISCCLHVTATYLIDPAIVGGPSMLPTMGPMATFLLTERNSLRFGKVERGDIVLVRSPVNPRNLLTKRLLGLEGDSVTFLVDPRNSDKCETIVVPKGHVWVQGDNIYNSRDSRQFGPVPYGLLYAKVFWRLWPLGGFGPLGKN	167

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4774g00142	167	Pfam	Signal peptidase, peptidase S26	22	103	IPR019533	GO:0004252\|GO:0006465
	Pral4774g00142	167	Pfam	Signal peptidase, peptidase S26	112	156	IPR019533	GO:0004252\|GO:0006465
	Pral4774g00142	167	SUPERFAMILY	LexA/Signal peptidase	35	164	IPR036286	-
	Pral4774g00142	167	FunFam	Inner membrane protease subunit 1	34	163	-	-
	Pral4774g00142	167	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	36	52	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4774g00142	167	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	89	101	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4774g00142	167	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4774g00142	167	CDD	S26_SPase_I	40	151	IPR019533	GO:0004252\|GO:0006465
	Pral4774g00142	167	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	12	166	-	-
	Pral4774g00142	167	Gene3D	Umud Fragment, subunit A	33	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4774g00142	Pral-Chr4774	808502	810215	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4774g00142	48	165	MADS-box Gene Family	AT1G29960	57.627	1.35e-47	149

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4774g00142	K09647		-	psom:113300611	207.223