Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00115 ATGTCAAGAGCCGGATGGATGCCCCGTCTAGCATTTCACATAGCTCAACTGCCAGCGCCTCAACGATTGAATTTGAGTGGGGTCCATTTTAAGAAGGGCAATGCAATGAAGCAGTCTTTCGACATTTCAGCTTCTGTAGGTCCAACCAAGATTCCATCTATAAATATCCCTAAACAAGTGGGACTTAATGCTTGGGGGGTTTCATCTGGATCTGAAGCCTACCATGCCTCATCAGATGCTAGCCTTTTTTCTACCTCATTGCCTGTTTTGCCACATGAGAAGTTGAACTTGAATGACACCGAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGCTTTAAAAAACTCCACCAAAATTTAGAGGTTAATGAATCACTTGAAGATGCGAATATTGAAGCACTTGGGACAACGCTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGAGGTGGAGGTATGGAACTGGAAACTGATACTCATGAAGGTCTTACAGTGGGCATTTCAAAACTAAGTTTCTCTGATAGTACAATTGGCAATGGTTTGCCCCATTATTCCTTTCCTAATGGTGTTGGAACTGTTGCTGGGGAACATCCATATGGGGAGCATCCATCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTGTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGAAGGAAACTTGACATTCATTTCTCAATACCGAAGGATAATCCATCCGACAAGGATATAAATCAAGGAACATTGGTGGTTTTTAATTTGGATCCGTCTGTTTCTAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCGGAAGCAGCACTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGTATAAAGCTAGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAGCTAAATCAAGATCTTGATCAAGATGATTCTCGGAATTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAACAGCCCCATTGAACATAAGCCAATGCAACCTATCAGTAATTCTCCTGGCTCTAGGATTATGAGCCCAACAACTGGCAACCATTTGCCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAGGGTGCAGCTATTGGTAAGGACCTGGGAAGGAGTAGTCATGGAGATCACATGTTTAGTAGTGCCAATTCATCACATGGAGCCACATTTCAATCTCATTCACTTCCAGAACCAGCATTCGGCCAATATCATGGAGCTTTGTCCTCTTTGGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGCCTAGACCATCTGTAGGGCCTCCATTCACATCAAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAATCATCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAATGCTGGCATTACTATTCCGCGGAACATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTACTCAGGGCTGCCACCCACTGCCCTGGACAGTTTGACTGACCGTGGAAGGAGTAGACGGCTAGAGAACAATGGTAGCCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCCGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCTCTTATCATTCCATTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTCCAGAATTCTAGTTTGATGAATGAAGACAAGAGGTGCCGCCCGATTCTCTTCCACTCGGAGGGTCCTGAAGCTGGTGATCAGATTGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAAGTCCTTGGGTCAAGTGATTCGCATTTGAATGACTCTCCTGGAAGCCCCCCCAAGGATAACCCTACTGTGAACTTGGAGACAAGCTAA 2685 0.4335 MSRAGWMPRLAFHIAQLPAPQRLNLSGVHFKKGNAMKQSFDISASVGPTKIPSINIPKQVGLNAWGVSSGSEAYHASSDASLFSTSLPVLPHEKLNLNDTENEYQSVDDISSGFKKLHQNLEVNESLEDANIEALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGGGGMELETDTHEGLTVGISKLSFSDSTIGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDDSRNFRHQVGSPVANSPPGNWLQFNSPIEHKPMQPISNSPGSRIMSPTTGNHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHMFSSANSSHGATFQSHSLPEPAFGQYHGALSSLGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRPSVGPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESSETSFMNHVGYGGINVGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSSPRLSPVFLGNGPYSGLPPTALDSLTDRGRSRRLENNGSQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLGSSDSHLNDSPGSPPKDNPTVNLETS 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00115 894 Gene3D - 218 312 IPR012677 -
Pral4774g00115 894 MobiDBLite consensus disorder prediction 574 589 - -
Pral4774g00115 894 CDD RRM2_MEI2_like 313 383 - -
Pral4774g00115 894 PANTHER RNA RECOGNITION MOTIF-CONTAINING 82 867 - -
Pral4774g00115 894 MobiDBLite consensus disorder prediction 484 510 - -
Pral4774g00115 894 MobiDBLite consensus disorder prediction 552 601 - -
Pral4774g00115 894 MobiDBLite consensus disorder prediction 489 509 - -
Pral4774g00115 894 FunFam MEI2-like protein 5 isoform 2 218 312 - -
Pral4774g00115 894 Gene3D - 313 410 IPR012677 -
Pral4774g00115 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 387 IPR000504 GO:0003723
Pral4774g00115 894 CDD RRM3_MEI2_like 733 818 IPR034454 -
Pral4774g00115 894 SUPERFAMILY RNA-binding domain, RBD 226 388 IPR035979 GO:0003676
Pral4774g00115 894 SUPERFAMILY RNA-binding domain, RBD 732 817 IPR035979 GO:0003676
Pral4774g00115 894 CDD RRM1_MEI2_like 228 304 IPR034453 -
Pral4774g00115 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 302 IPR000504 GO:0003723
Pral4774g00115 894 MobiDBLite consensus disorder prediction 869 894 - -
Pral4774g00115 894 Pfam RNA recognition motif 2 730 826 IPR007201 -
Pral4774g00115 894 FunFam Protein MEI2-like 1 313 408 - -
Pral4774g00115 894 SMART rrm1_1 732 808 IPR000504 GO:0003723
Pral4774g00115 894 SMART rrm1_1 230 298 IPR000504 GO:0003723
Pral4774g00115 894 SMART rrm1_1 315 383 IPR000504 GO:0003723
Pral4774g00115 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 381 IPR000504 GO:0003723
Pral4774g00115 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00115 Pral-Chr4774 671664 679847 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00115 224 392 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 2.98e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00115 - - gmx:100800877 1437.17