Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00114 ATGTCAAGAGCCGGATGGATGCCCCGTCTAGCATTTCACATAGCTCAACTGCCAGCGCCTCAACGATTGAATTTGAGTGGGGTCCATTTTAAGAAGGGCAATGCAATGAAGCAGTCTTTCGACATTTCAGCTTCTGGTCCAACCAAGATTCCATCTATAAATATCCCTAAACAAGTGGGACTTAATGCTTGGGGGGTTTCATCTGGATCTGAAGCCTACCATGCCTCATCAGATGCTAGCCTTTTTTCTACCTCATTGCCTGTTTTGCCACATGAGAAGTTGAACTTGAATGACACCGAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGCTTTAAAAAACTCCACCAAAATTTAGAGGTTAATGAATCACTTGAAGATGCGAATATTGAAGCACTTGGGACAACGCTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGAGGTGGAGGTATGGAACTGGAAACTGATACTCATGAAGGTCTTACAGTGGGCATTTCAAAACTAAGTTTCTCTGATAGTACAATTGGCAATGGTTTGCCCCATTATTCCTTTCCTAATGGTGTTGGAACTGTTGCTGGGGAACATCCATATGGGGAGCATCCATCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTGTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGAAGGAAACTTGACATTCATTTCTCAATACCGAAGGATAATCCATCCGACAAGGATATAAATCAAGGAACATTGGTGGTTTTTAATTTGGATCCGTCTGTTTCTAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCGGAAGCAGCACTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGTATAAAGCTAGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAGCTAAATCAAGATCTTGATCAAGATGATTCTCGGAATTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAACAGCCCCATTGAACATAAGCCAATGCAACCTATCAGTAATTCTCCTGGCTCTAGGATTATGAGCCCAACAACTGGCAACCATTTGCCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAGGGTGCAGCTATTGGTAAGGACCTGGGAAGGAGTAGTCATGGAGATCACATGTTTAGTAGTGCCAATTCATCACATGGAGCCACATTTCAATCTCATTCACTTCCAGAACCAGCATTCGGCCAATATCATGGAGCTTTGTCCTCTTTGGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGCCTAGACCATCTGTAGGGCCTCCATTCACATCAAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAATCATCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAATGCTGGCATTACTATTCCGCGGAACATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTACTCAGGGCTGCCACCCACTGCCCTGGACAGTTTGACTGACCGTGGAAGGAGTAGACGGCTAGAGAACAATGGTAGCCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCCGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCTCTTATCATTCCATTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTCCAGAATTCTAGTTTGATGAATGAAGACAAGAGGTGCCGCCCGATTCTCTTCCACTCGGAGGGTCCTGAAGCTGGTGATCAGATTGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAAGTCCTTGGGTCAAGTGATTCGCATTTGAATGACTCTCCTGGAAGCCCCCCCAAGGATAACCCTACTGTGAACTTGGAGACAAGCTAA 2682 0.4336 MSRAGWMPRLAFHIAQLPAPQRLNLSGVHFKKGNAMKQSFDISASGPTKIPSINIPKQVGLNAWGVSSGSEAYHASSDASLFSTSLPVLPHEKLNLNDTENEYQSVDDISSGFKKLHQNLEVNESLEDANIEALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGGGGMELETDTHEGLTVGISKLSFSDSTIGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDDSRNFRHQVGSPVANSPPGNWLQFNSPIEHKPMQPISNSPGSRIMSPTTGNHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHMFSSANSSHGATFQSHSLPEPAFGQYHGALSSLGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRPSVGPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESSETSFMNHVGYGGINVGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSSPRLSPVFLGNGPYSGLPPTALDSLTDRGRSRRLENNGSQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLGSSDSHLNDSPGSPPKDNPTVNLETS 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00114 893 MobiDBLite consensus disorder prediction 868 893 - -
Pral4774g00114 893 SUPERFAMILY RNA-binding domain, RBD 225 387 IPR035979 GO:0003676
Pral4774g00114 893 FunFam Protein MEI2-like 1 312 407 - -
Pral4774g00114 893 SUPERFAMILY RNA-binding domain, RBD 731 816 IPR035979 GO:0003676
Pral4774g00114 893 PANTHER RNA RECOGNITION MOTIF-CONTAINING 80 866 - -
Pral4774g00114 893 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 386 IPR000504 GO:0003723
Pral4774g00114 893 Gene3D - 312 409 IPR012677 -
Pral4774g00114 893 MobiDBLite consensus disorder prediction 573 588 - -
Pral4774g00114 893 FunFam MEI2-like protein 5 isoform 2 217 311 - -
Pral4774g00114 893 CDD RRM3_MEI2_like 732 817 IPR034454 -
Pral4774g00114 893 MobiDBLite consensus disorder prediction 483 509 - -
Pral4774g00114 893 CDD RRM1_MEI2_like 227 303 IPR034453 -
Pral4774g00114 893 MobiDBLite consensus disorder prediction 551 600 - -
Pral4774g00114 893 MobiDBLite consensus disorder prediction 488 508 - -
Pral4774g00114 893 SMART rrm1_1 229 297 IPR000504 GO:0003723
Pral4774g00114 893 SMART rrm1_1 314 382 IPR000504 GO:0003723
Pral4774g00114 893 SMART rrm1_1 731 807 IPR000504 GO:0003723
Pral4774g00114 893 Gene3D - 217 311 IPR012677 -
Pral4774g00114 893 CDD RRM2_MEI2_like 312 382 - -
Pral4774g00114 893 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Pral4774g00114 893 Pfam RNA recognition motif 2 729 825 IPR007201 -
Pral4774g00114 893 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 294 IPR000504 GO:0003723
Pral4774g00114 893 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 380 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00114 Pral-Chr4774 671664 679847 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00114 223 391 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 2.93e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00114 - - gmx:100800877 1440.63