Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00111 ATGAAGCAGTCTTTCGACATTTCAGCTTCTGGTCCAACCAAGATTCCATCTATAAATATCCCTAAACAAGTGGGACTTAATGCTTGGGGGGTTTCATCTGGATCTGAAGCCTACCATGCCTCATCAGATGCTAGCCTTTTTTCTACCTCATTGCCTGTTTTGCCACATGAGAAGTTGAACTTGAATGACACCGAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGCTTTAAAAAACTCCACCAAAATTTAGAGGTTAATGAATCACTTGAAGATGCGAATATTGAAGCACTTGGGACAACGCTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGAGGTGGAGGTATGGAACTGGAAACTGATACTCATGAAGGTCTTACAGTGGGCATTTCAAAACTAAGTTTCTCTGATAGTACAATTGGCAATGGTTTGCCCCATTATTCCTTTCCTAATGGTGTTGGAACTGTTGCTGGGGAACATCCATATGGGGAGCATCCATCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTGTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGAAGGAAACTTGACATTCATTTCTCAATACCGAAGGATAATCCATCCGACAAGGATATAAATCAAGGAACATTGGTGGTTTTTAATTTGGATCCGTCTGTTTCTAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCGGAAGCAGCACTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGTATAAAGCTAGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAGCTAAATCAAGATCTTGATCAAGATGATTCTCGGAATTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAACAGCCCCATTGAACATAAGCCAATGCAACCTATCAGTAATTCTCCTGGCTCTAGGATTATGAGCCCAACAACTGGCAACCATTTGCCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAGGGTGCAGCTATTGGTAAGGACCTGGGAAGGAGTAGTCATGGAGATCACATGTTTAGTAGTGCCAATTCATCACATGGAGCCACATTTCAATCTCATTCACTTCCAGAACCAGCATTCGGCCAATATCATGGAGCTTTGTCCTCTTTGGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGCCTAGACCATCTGTAGGGCCTCCATTCACATCAAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAATCATCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAATGCTGGCATTACTATTCCGCGGAACATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTACTCAGGGCTGCCACCCACTGCCCTGGACAGTTTGACTGACCGTGGAAGGAGTAGACGGCTAGAGAACAATGGTAGCCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCCGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCTCTTATCATTCCATTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTCCAGAATTCTAGTTTGATGAATGAAGACAAGAGGTGCCGCCCGATTCTCTTCCACTCGGAGGGTCCTGAAGCTGGTGATCAGATTGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAAGTCCTTGGGTCAAGTGATTCGCATTTGAATGACTCTCCTGGAAGCCCCCCCAAGGATAACCCTACTGTGAACTTGGAGACAAGCTAA 2577 0.4311 MKQSFDISASGPTKIPSINIPKQVGLNAWGVSSGSEAYHASSDASLFSTSLPVLPHEKLNLNDTENEYQSVDDISSGFKKLHQNLEVNESLEDANIEALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGGGGMELETDTHEGLTVGISKLSFSDSTIGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDDSRNFRHQVGSPVANSPPGNWLQFNSPIEHKPMQPISNSPGSRIMSPTTGNHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHMFSSANSSHGATFQSHSLPEPAFGQYHGALSSLGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRPSVGPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESSETSFMNHVGYGGINVGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSSPRLSPVFLGNGPYSGLPPTALDSLTDRGRSRRLENNGSQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLGSSDSHLNDSPGSPPKDNPTVNLETS 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00111 858 SUPERFAMILY RNA-binding domain, RBD 190 351 IPR035979 GO:0003676
Pral4774g00111 858 Gene3D - 277 374 IPR012677 -
Pral4774g00111 858 FunFam MEI2-like protein 5 isoform 2 182 276 - -
Pral4774g00111 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 351 IPR000504 GO:0003723
Pral4774g00111 858 SMART rrm1_1 279 347 IPR000504 GO:0003723
Pral4774g00111 858 SMART rrm1_1 194 262 IPR000504 GO:0003723
Pral4774g00111 858 SMART rrm1_1 696 772 IPR000504 GO:0003723
Pral4774g00111 858 MobiDBLite consensus disorder prediction 453 473 - -
Pral4774g00111 858 CDD RRM2_MEI2_like 277 347 - -
Pral4774g00111 858 MobiDBLite consensus disorder prediction 538 553 - -
Pral4774g00111 858 MobiDBLite consensus disorder prediction 516 565 - -
Pral4774g00111 858 MobiDBLite consensus disorder prediction 448 474 - -
Pral4774g00111 858 FunFam Protein MEI2-like 1 277 372 - -
Pral4774g00111 858 CDD RRM3_MEI2_like 697 782 IPR034454 -
Pral4774g00111 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 266 IPR000504 GO:0003723
Pral4774g00111 858 Pfam RNA recognition motif 2 694 790 IPR007201 -
Pral4774g00111 858 CDD RRM1_MEI2_like 192 268 IPR034453 -
Pral4774g00111 858 SUPERFAMILY RNA-binding domain, RBD 696 781 IPR035979 GO:0003676
Pral4774g00111 858 MobiDBLite consensus disorder prediction 833 858 - -
Pral4774g00111 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 259 IPR000504 GO:0003723
Pral4774g00111 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 345 IPR000504 GO:0003723
Pral4774g00111 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 831 - -
Pral4774g00111 858 Gene3D - 182 276 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00111 Pral-Chr4774 671664 680187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00111 188 356 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 3.19e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00111 - - gmx:100800877 1440.63