Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00110 ATGAAGCAGTCTTTCGACATTTCAGCTTCTGTAGGTCCAACCAAGATTCCATCTATAAATATCCCTAAACAAGTGGGACTTAATGCTTGGGGGGTTTCATCTGGATCTGAAGCCTACCATGCCTCATCAGATGCTAGCCTTTTTTCTACCTCATTGCCTGTTTTGCCACATGAGAAGTTGAACTTGAATGACACCGAAAATGAGTATCAGTCTGTGGATGACATCTCATCTGGCTTTAAAAAACTCCACCAAAATTTAGAGGTTAATGAATCACTTGAAGATGCGAATATTGAAGCACTTGGGACAACGCTTCCAGATGACGAGGAGGAGCTTTTAGCTGGCATAACGGATGATTTTGACCTGAGTGGTTTGCCTGGTTCCCTGGAGGACTTGGAAGATTATGATCTTTTTGGAGGTGGAGGTATGGAACTGGAAACTGATACTCATGAAGGTCTTACAGTGGGCATTTCAAAACTAAGTTTCTCTGATAGTACAATTGGCAATGGTTTGCCCCATTATTCCTTTCCTAATGGTGTTGGAACTGTTGCTGGGGAACATCCATATGGGGAGCATCCATCTCGAACATTATTTGTTCGAAATATTAACAGTAATGTGGAGGATTCAGAATTGAGAGCCCTGTTTGAGCAATATGGTGATATTAGAACCCTCTATACTGCATGTAAACATCGGGGGTTTGTAATGATATCCTACTATGACATCCGTGCTGCTCGAACAGCTATGCGTGCATTACAAAACAAACCTCTGCGGCGAAGGAAACTTGACATTCATTTCTCAATACCGAAGGATAATCCATCCGACAAGGATATAAATCAAGGAACATTGGTGGTTTTTAATTTGGATCCGTCTGTTTCTAATGAAGACCTTCGACAAATATTTGGGGCTTATGGCGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAATTTGTTGAATTTTATGATGTCAGAGCTGCGGAAGCAGCACTTAAATCATTGAACAGGAGTGACATAGCTGGTAAACGTATAAAGCTAGAACCTAGTCGTCCTGGTGGAGCTCGTCGAAATTTGATGCTCCAGCTAAATCAAGATCTTGATCAAGATGATTCTCGGAATTTCCGACATCAAGTGGGTTCACCTGTAGCCAACTCTCCACCAGGTAACTGGTTGCAGTTTAACAGCCCCATTGAACATAAGCCAATGCAACCTATCAGTAATTCTCCTGGCTCTAGGATTATGAGCCCAACAACTGGCAACCATTTGCCAGGATTAGCTTCAATCTTGCAACCTCAAGGATCTAACTCTATAAAGGGTGCAGCTATTGGTAAGGACCTGGGAAGGAGTAGTCATGGAGATCACATGTTTAGTAGTGCCAATTCATCACATGGAGCCACATTTCAATCTCATTCACTTCCAGAACCAGCATTCGGCCAATATCATGGAGCTTTGTCCTCTTTGGGTCCATCAACTTCAAATGGATCTTCTGTGGAAACCTTGTCTGGGCCTCAGTTTCTTTGGGGAAATTCAAGCTTATACTCTGAGCACACCAAACCTTCACCTTGGCCTAGACCATCTGTAGGGCCTCCATTCACATCAAATGGAAAGGGTCATGGCTTCCCATACTCTGGTCAGAATGGTTCCTTTGTTGGATCGTCCCAGCATCATCTTCATCATCATGTAGGCTCTGCTCCATCAGGTGTTCCATTTGAGAGGCGCTTTGGTTTTCTTCCTGAATCATCTGAAACCTCATTTATGAATCATGTTGGTTATGGAGGCATAAATGTGGGACACAATGATGGAAACTACATGGTTAACATGGGTGGATCTGTTAATGCTGGCATTACTATTCCGCGGAACATGTCTGAAAATGTTCAATCAAACTTTAGAATGAGATCTTCTCCAAGGCTTAGCCCTGTGTTTCTGGGTAATGGTCCTTACTCAGGGCTGCCACCCACTGCCCTGGACAGTTTGACTGACCGTGGAAGGAGTAGACGGCTAGAGAACAATGGTAGCCAAGTTGATAGCAAGAAGCAATTTTTGCTTGACTTGGATAAGATTAAAAGCGGTGAAGATGCAAGGACTACTTTAATGATAAAGAATATCCCAAATAAGTACACTTCAAAAATGTTACTAGCCGCCATTGACGAAAATCACAGGGGCACCTATGATTTCCTCTATCTGCCTATTGATTTTAAGAATAAGTGTAATGTGGGTTATGCATTTATCAACATGCTGTCACCTTCTCTTATCATTCCATTCTACGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAGAAAGTTGCTTCTTTGGCATATGCTCGAATCCAAGGAAAGGCTGCCCTTGTGAGCCACTTCCAGAATTCTAGTTTGATGAATGAAGACAAGAGGTGCCGCCCGATTCTCTTCCACTCGGAGGGTCCTGAAGCTGGTGATCAGATTGTACAAGAACATCTTCCCTCCAACAATCTCAACATCCAAGTCCTTGGGTCAAGTGATTCGCATTTGAATGACTCTCCTGGAAGCCCCCCCAAGGATAACCCTACTGTGAACTTGGAGACAAGCTAA 2580 0.431 MKQSFDISASVGPTKIPSINIPKQVGLNAWGVSSGSEAYHASSDASLFSTSLPVLPHEKLNLNDTENEYQSVDDISSGFKKLHQNLEVNESLEDANIEALGTTLPDDEEELLAGITDDFDLSGLPGSLEDLEDYDLFGGGGMELETDTHEGLTVGISKLSFSDSTIGNGLPHYSFPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFVEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQDLDQDDSRNFRHQVGSPVANSPPGNWLQFNSPIEHKPMQPISNSPGSRIMSPTTGNHLPGLASILQPQGSNSIKGAAIGKDLGRSSHGDHMFSSANSSHGATFQSHSLPEPAFGQYHGALSSLGPSTSNGSSVETLSGPQFLWGNSSLYSEHTKPSPWPRPSVGPPFTSNGKGHGFPYSGQNGSFVGSSQHHLHHHVGSAPSGVPFERRFGFLPESSETSFMNHVGYGGINVGHNDGNYMVNMGGSVNAGITIPRNMSENVQSNFRMRSSPRLSPVFLGNGPYSGLPPTALDSLTDRGRSRRLENNGSQVDSKKQFLLDLDKIKSGEDARTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFNGKKWEKFNSEKVASLAYARIQGKAALVSHFQNSSLMNEDKRCRPILFHSEGPEAGDQIVQEHLPSNNLNIQVLGSSDSHLNDSPGSPPKDNPTVNLETS 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00110 859 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Pral4774g00110 859 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Pral4774g00110 859 MobiDBLite consensus disorder prediction 517 566 - -
Pral4774g00110 859 CDD RRM3_MEI2_like 698 783 IPR034454 -
Pral4774g00110 859 PANTHER RNA RECOGNITION MOTIF-CONTAINING 57 832 - -
Pral4774g00110 859 SUPERFAMILY RNA-binding domain, RBD 697 782 IPR035979 GO:0003676
Pral4774g00110 859 Gene3D - 183 277 IPR012677 -
Pral4774g00110 859 Pfam RNA recognition motif 2 695 791 IPR007201 -
Pral4774g00110 859 MobiDBLite consensus disorder prediction 454 474 - -
Pral4774g00110 859 CDD RRM2_MEI2_like 278 348 - -
Pral4774g00110 859 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Pral4774g00110 859 MobiDBLite consensus disorder prediction 449 475 - -
Pral4774g00110 859 Gene3D - 278 375 IPR012677 -
Pral4774g00110 859 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Pral4774g00110 859 SUPERFAMILY RNA-binding domain, RBD 191 352 IPR035979 GO:0003676
Pral4774g00110 859 CDD RRM1_MEI2_like 193 269 IPR034453 -
Pral4774g00110 859 SMART rrm1_1 280 348 IPR000504 GO:0003723
Pral4774g00110 859 SMART rrm1_1 697 773 IPR000504 GO:0003723
Pral4774g00110 859 SMART rrm1_1 195 263 IPR000504 GO:0003723
Pral4774g00110 859 MobiDBLite consensus disorder prediction 834 859 - -
Pral4774g00110 859 FunFam Protein MEI2-like 1 278 373 - -
Pral4774g00110 859 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Pral4774g00110 859 MobiDBLite consensus disorder prediction 539 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00110 Pral-Chr4774 671664 680187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00110 189 357 Eukaryotic Initiation Factors Gene Family AT1G71770 25.907 3.34e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00110 - - gmx:100800877 1437.17