Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00082 ATGGCTTTCCAAAACCAATCCGTGTCAGTTTCACCCCAGAGGAAGACAGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACAAATCGCCAAGTCACCTTCTGCAAACGCAGAAATGGACTGCTCAAGAAGGCTTATGAACTATCTGTGCTCTGTGATGCTGAGGTCGCTTTAATCGTCTTCTCTAGCCGCGGTCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACCATTGATAGGTACAAGAAAGCATGTTCAGATTCTACTGGTGGATCTACTTCTGAAGTTAACGCTCAGTATTATCAACAAGAATCCGCCAAACTGCGTGCCCAGATTAGCAACCTGCAGAATCACAACAGGCAAATGATGGGGGAGGGTTTGAGCAATCTGCACTCCAAGGATCTCAAGAACCTGGAGGGAAGGTTAGAAAGAGGGATCAGCAGAATTCGTTCCAAAAAGAATGAGCTTCTATTTGCAGAAATTGAGTACATGCAGAAGAGGGAAATAGACTTGCATAACAGCAATCAACTTCTTCGAGCAAAGATAGCTGAAAGTGAGAGGAACCAACAGCAAAACCTGAATTTATTGGGAGCAGGAGGGTCGGACTATGAATCCTTGCAATCCCAGCAGCAATTTGACAATCGAGGTTACTTTCAAGTCTCTGCATTACAACCCAATCATCAGTATCCACGCCAAGACCACATGTCCCTCCAATTAGTTTGA 732 0.4454 MAFQNQSVSVSPQRKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSTGGSTSEVNAQYYQQESAKLRAQISNLQNHNRQMMGEGLSNLHSKDLKNLEGRLERGISRIRSKKNELLFAEIEYMQKREIDLHNSNQLLRAKIAESERNQQQNLNLLGAGGSDYESLQSQQQFDNRGYFQVSALQPNHQYPRQDHMSLQLV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00082 243 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 Pfam K-box region 98 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4774g00082 243 Gene3D - 28 120 IPR036879 GO:0003677|GO:0046983
Pral4774g00082 243 ProSiteProfiles K-box domain profile. 101 191 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4774g00082 243 MobiDBLite consensus disorder prediction 1 22 - -
Pral4774g00082 243 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Pral4774g00082 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 195 - -
Pral4774g00082 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Pral4774g00082 243 Coils Coil 138 158 - -
Pral4774g00082 243 Coils Coil 101 128 - -
Pral4774g00082 243 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pral4774g00082 243 FunFam agamous-like MADS-box protein AGL11 28 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00082 Pral-Chr4774 434307 442489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00082 14 243 MADS-box Gene Family AT3G58780 66.383 1.11e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4774g00082 K-box 9.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00082 K09264 - qsa:O6P43_012856 383.645