Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00070 ATGGCTTCGGGGGCTATATTTTCCTCCCTGCGACGGCGGAGGTCGCCGTCGTTGGACGCCTTTCTTGCTCCGGTTGACCTGACAGATGTTTCCTTGGTTCAAACTGTCGTGTCCGTGGCTAGCGAGCTTGTCTCTTGCTTCTCCGGGCGTTCGTTCTTCTTTCAACGCAAGAATTCGCGGGCGTTTATACGAAAGGTCGAGGTGTTTCAGTTGCTTTTGGAGTACCTACGGGACAGCGGAACAGATATTCCGATGACAGGGTTGGTTTGTCTTAAGGAGCTCTATCTTCTTCTGTATCGGTCGAAGATTCTGCTTGATTATTGCGCGCAGTCGGGTAGGTTATGGCTTTTGCTTCAGAACCATTCAGTTTCTGGTCATTTCCATGATTTGAATAAAGAAATTTCGACTCTCTTGGATGTATTCCCGACTAAGGATGTTCAATTGAGTGAGGATATCAGAGAACAGATTGAGCTATTGCAGAAACAATCTAGGAGAGCTGAGTTGTTTATTGACAAGAAAGACGATGAGCTCCGCACCGAGTTCTTGTCGTATCTTGATGAATTTGAGAATGGGCGAGTTCCTGATTCAGCAGGGCTACGATCATTTTTTATAAAGAAACTGCAGATTCTGGATGCTAGGAGTTGTAGAGAAGAAATTGAGTCATTGGAGGAGCAGATTATTAACCACGAAGGAGATGTTGAGCCAACAGTTTCTGTGCTTAATGGTTTGGTTGCATTGACACGGTATTCTAGATTTTTGCTCTTCGGATTTGAGGAAGATGAAGTAGAACTAGAAAATGGAAACCAGATGAAAAAACTGAAGAAGAGGTTGATTAATCAAGAAATTGCTGAAGCATTTGTAACTATGCCTAAGGACTTTTACTGCCCAATATCGTTGGATTTGATGAAAGACCCAGTGATAATCGCCACAGGACAAACATATGATAGAAGCTCCATATCAAGGTGGTTCGAAGAAGGGCATTGTACTTGTCCAAAAACAGGACAAATGCTTGCCCACACAAAACTTGTCCGGAATCGAGCTCTGAAGAATTTGATCATGAAGTTTTGCACTGCACATGGACTCCCTCATGACTCACTGGAGGCGGTAGATGCAGTGCCGGATACCTTTTCAATGGCTTCTCCATCAAAAGCTGCCCTTGAAGCCAATCGAGCAACAGCAACGCTTCTCATTCCGCAGCTGGAGAATGGATCACGAGTTGCAGAGACTATAGCCGCCCGGGAGATACGATTGCTTGCTAAAACAGGCAAGGAAAATCGTGCATTCATTGCAGAAGCTGGGGCGATTCCTCGCCTTTGTAAACTACTTTCATCTCCTAATGCCATTGCTCAGGAGAATGCAGTGACAGCATTGCTCAACCTGTCAATATATGAGAAGAACAAGAGACGGATCATTGATGAAGAAGGTTGTCTGGAATCCATGGTTGATGTATTGAGATTAGGTCACACAACGGAGGCAAGAGAGAATGCTGCTGCAACATTGTTCAGCCTCTCAGCAGTCCATGAATATAAGAAGATAATTGCAGATAAGGAAGGAGCAATTGAAGCCCTGGCCCGGCTCTTGCAAGAGGGAAACCTAAGAGGAAAGAAAGATGCAGTGACAGCCTTATTCAATCTTTCCACCCACTCTGATAACTGTACTAGAATGATTGAAGCCGGAGCTATAACAGCTCTAGTTGGTGCTTTGAGGACCGAAGGAGTGGCTGAGGAAGCAGCAGGCGCACTTGCCTTGATTGTCCGGCAACCTGTCGGAGCTAAGGCAGTGGTGAAGGAGGAAGAAGCGGTGGCTGGATTGATGGAAATGATGCGCTGTGGAACCGCACGGGGGAAAGAGAATGCTGTAGCAGCATTACTGGAGCTGTGCCGGAGTGGAGGTGCAGCAGCAACCGAGAGGGTGGTGAGGGCACCGGCTTTGGCCGGATTGCTTCAAACCCTACTTTTTACAGGAACAAAAAGGGCTAGAAGGAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGACGTGAAAATACATCTCCGCATTATGGTGGACTAGATGTGGGATATGCATATGCTGGCAATTCAGCTACCGGTAGAGATACAACCTTTGCGGGGGATGTTTCAGTACCAATGTCTATTTCTGTCCCTCTCTTGTAA 2151 0.463 MASGAIFSSLRRRRSPSLDAFLAPVDLTDVSLVQTVVSVASELVSCFSGRSFFFQRKNSRAFIRKVEVFQLLLEYLRDSGTDIPMTGLVCLKELYLLLYRSKILLDYCAQSGRLWLLLQNHSVSGHFHDLNKEISTLLDVFPTKDVQLSEDIREQIELLQKQSRRAELFIDKKDDELRTEFLSYLDEFENGRVPDSAGLRSFFIKKLQILDARSCREEIESLEEQIINHEGDVEPTVSVLNGLVALTRYSRFLLFGFEEDEVELENGNQMKKLKKRLINQEIAEAFVTMPKDFYCPISLDLMKDPVIIATGQTYDRSSISRWFEEGHCTCPKTGQMLAHTKLVRNRALKNLIMKFCTAHGLPHDSLEAVDAVPDTFSMASPSKAALEANRATATLLIPQLENGSRVAETIAAREIRLLAKTGKENRAFIAEAGAIPRLCKLLSSPNAIAQENAVTALLNLSIYEKNKRRIIDEEGCLESMVDVLRLGHTTEARENAAATLFSLSAVHEYKKIIADKEGAIEALARLLQEGNLRGKKDAVTALFNLSTHSDNCTRMIEAGAITALVGALRTEGVAEEAAGALALIVRQPVGAKAVVKEEEAVAGLMEMMRCGTARGKENAVAALLELCRSGGAAATERVVRAPALAGLLQTLLFTGTKRARRKAASLARVFQRRENTSPHYGGLDVGYAYAGNSATGRDTTFAGDVSVPMSISVPLL 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00070 716 SMART arm_5 588 628 IPR000225 GO:0005515
Pral4774g00070 716 SMART arm_5 463 505 IPR000225 GO:0005515
Pral4774g00070 716 SMART arm_5 548 586 IPR000225 GO:0005515
Pral4774g00070 716 SMART arm_5 507 547 IPR000225 GO:0005515
Pral4774g00070 716 SMART arm_5 422 462 IPR000225 GO:0005515
Pral4774g00070 716 Coils Coil 205 232 - -
Pral4774g00070 716 PANTHER U BOX DOMAIN-CONTAINING 68 670 - -
Pral4774g00070 716 Gene3D - 365 489 IPR011989 -
Pral4774g00070 716 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Pral4774g00070 716 Gene3D - 490 675 IPR011989 -
Pral4774g00070 716 SUPERFAMILY ARM repeat 395 670 IPR016024 -
Pral4774g00070 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Pral4774g00070 716 FunFam RING-type E3 ubiquitin transferase 365 686 - -
Pral4774g00070 716 Pfam Armadillo/beta-catenin-like repeat 512 546 IPR000225 GO:0005515
Pral4774g00070 716 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Pral4774g00070 716 SUPERFAMILY RING/U-box 278 362 - -
Pral4774g00070 716 FunFam RING-type E3 ubiquitin transferase 288 362 - -
Pral4774g00070 716 Pfam U-box domain 290 359 IPR003613 GO:0004842|GO:0016567
Pral4774g00070 716 CDD RING-Ubox_PUB 290 342 IPR045210 -
Pral4774g00070 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 363 IPR013083 -
Pral4774g00070 716 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Pral4774g00070 716 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00070 Pral-Chr4774 338562 341294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00070 1 716 U-box Gene Family AT1G29340 67.302 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00070 - - gmx:100783749 1069.3