Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00057 ATGAAAACACCAAGTAACGAAACGAAGGGTAGGGCGAAGAAGTCATCGTCACGGGGCCACCACAGGTTCGTTGGCGTTCGTCAGAGGCCGTCCGGAAGATGGGTGGCCGAGATCAAAGACTCACTTCAGAAGGTCAGGCTCTGGCTCGGAACTTTCGACACTGCAGAAGATGCAGCTCGAGCCTATGACTCCGCGGCTCGTGCCTTGCGTGGTGCAAATGCTCGCACCAACTTTGAACTGCCGGATCAATCTGCAGCCTCTGGCTGCGGCGGTTTTAGCTACGCGCCGGAGAACATGGAGCCCTTCTCGTTCGAGGATGTGCCTGAGGCTGGTGCAGATTCAGATGGACTTGTTGGTGCTCTCAGAGCCAAATTGTTTGATGATGGGACAAAGACATCATCGAATCCTACGTCTATTATTGGGTATAATGCGACTTCGAGCTCAACTACACGTAACCATCCAAACAACACAGAAATATCAATACCCTCAAATCCCCCCAAAGCTAAGAGAGTAATCGTTTCGGATACTGTAGATCCTGGAACGACGACCATGAGGAGCATGAGCTTGGGCTGGTCAAACGATGCAGCATATGGACTGCCATGGCAGTCACAGGAGACGAATCAGGGCTCTGAAAGTGGCTTACTTGACGATGCTGTTCGCGGAAGCACGGGATCGTGGCCTTTTTCTGGGGTGGCTGAGCCGGAGTCAACCTTTGACCTGACATGTTCAGATCATGGGTTATCCAACAGTGATAAGAATGGTCAAACGAATGTGGTGAGCTTAGAGGTGAATCAGATTGGTGAAACTTCGTCTGAGTGCTTCTGGTCACCTGAGCAGCAACAGTTCGTGCACTGTGATAACAACAGTTGGTTTAACTCCGGTGGCACTTGGGATCCACTGCTCTATACTTCCGAGCTTGGTTGA 924 0.513 MKTPSNETKGRAKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDSAARALRGANARTNFELPDQSAASGCGGFSYAPENMEPFSFEDVPEAGADSDGLVGALRAKLFDDGTKTSSNPTSIIGYNATSSSTTRNHPNNTEISIPSNPPKAKRVIVSDTVDPGTTTMRSMSLGWSNDAAYGLPWQSQETNQGSESGLLDDAVRGSTGSWPFSGVAEPESTFDLTCSDHGLSNSDKNGQTNVVSLEVNQIGETSSECFWSPEQQQFVHCDNNSWFNSGGTWDPLLYTSELG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00057 307 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 207 - -
Pral4774g00057 307 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pral4774g00057 307 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pral4774g00057 307 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Pral4774g00057 307 MobiDBLite consensus disorder prediction 137 166 - -
Pral4774g00057 307 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pral4774g00057 307 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pral4774g00057 307 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pral4774g00057 307 MobiDBLite consensus disorder prediction 1 28 - -
Pral4774g00057 307 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pral4774g00057 307 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Pral4774g00057 307 MobiDBLite consensus disorder prediction 137 163 - -
Pral4774g00057 307 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00057 Pral-Chr4774 258003 258926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00057 3 87 AP2-EREBP Transcription Factor Family AT5G19790 59.770 1.10e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4774g00057 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00057 - - pcin:129305465 406.371