Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00049 ATGGATCAGGCGAGGAAGCCAGAAAGTGATGAGGCATCGGATCTCGTTGATGAAGGGACAGGAAATAAAACAACTCATTCGGTTGAAGGGTCTGCTGATGCAGTAGCTGGTGGCAGCTTGAGTGGAGCTATCAAAAGTGGAGATGTGACTACAGAAGAGACAGGTAATGATCCGGGACTGAATAAGAAACTACATGAGGCGCCTGCAGAAGCTATGGATAAGGGCACGCGGGATCAGCAAAGTACCAGTGACACATTCCTTGTAGTTGATCAGGGAACAAGTTATAATTCAAGGAATTTGCATAATAGGGCCGTACTTGAGACCGTGGTTGTAATAGATTCTGCTGAGACAGAGTGTGTGAATGGAGGTAATGGGAAGTTCGAAGCGAAAGTCAATGAATCGGAGTTGAACAAGGCATCTATGAAATCACCAAAAGGGCCGTCTGAAGGGGATAAAAATTCATGCGTGATCAATATAAAGTCTGGTAGCTGCAGAGAATTTAGCGAGAATGTGGAGGGTGAAAGGGTTTGTAGAATTTGCCATCTGGCTTCTGGGCAACCATCAGATTCAACAGCTGCTAGCCCAACAAACAGTGCTTCTAGTGGAGAACTAATTCAGCTTGGTTGTGCGTGTAAAGATGAGCTGGGTATTGCGCACAGTCATTGTGCTGAGGCATGGTTCAAGTTAAAAGGCAACAGATTGTGTGAAATATGTGGCGAAACTGCCAAAAATGTTTCGGGTGTTGCTGATCATGGATTTATGGAAGAGTGGAATGAAAGGACATTCATCGACAATCGCAGCACCTCATCTGGCATGTGCTGTGGATGCTGGCGTGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATTGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATGTTCTGA 918 0.4521 MDQARKPESDEASDLVDEGTGNKTTHSVEGSADAVAGGSLSGAIKSGDVTTEETGNDPGLNKKLHEAPAEAMDKGTRDQQSTSDTFLVVDQGTSYNSRNLHNRAVLETVVVIDSAETECVNGGNGKFEAKVNESELNKASMKSPKGPSEGDKNSCVINIKSGSCREFSENVEGERVCRICHLASGQPSDSTAASPTNSASSGELIQLGCACKDELGIAHSHCAEAWFKLKGNRLCEICGETAKNVSGVADHGFMEEWNERTFIDNRSTSSGMCCGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00049 305 MobiDBLite consensus disorder prediction 1 63 - -
Pral4774g00049 305 MobiDBLite consensus disorder prediction 1 17 - -
Pral4774g00049 305 Pfam RING-variant domain 177 238 IPR011016 GO:0008270
Pral4774g00049 305 SMART ringv_2 176 239 IPR011016 GO:0008270
Pral4774g00049 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 249 IPR013083 -
Pral4774g00049 305 SUPERFAMILY RING/U-box 174 241 - -
Pral4774g00049 305 ProSiteProfiles Zinc finger RING-CH-type profile. 169 245 IPR011016 GO:0008270
Pral4774g00049 305 PANTHER ZINC FINGER, RING-CH-TYPE 57 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00049 Pral-Chr4774 215594 221015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00049 106 304 C3H Transcription Factor Family AT5G05830 33.824 1.63e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00049 - - gmx:100791129 358.607