Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4774g00005 ATGGTTTACTGCTCTTATAATTCGGTCTCTTCATCTGGGTCTGATGTCTCGAGGCTGTTCGATCCAACTTCGCATAAAATTGTTGACTCTAATGGGGTTTCGCAGAGTAGGGTGGTGTCACCGAATTCGTTGGTCTTGAATAGTCAGAAGGGGCATCCAATTAATTCCCCTATGAAGATAGGAAAGAAAGAGGCATCGGAGGCAAAAGCTTTGGCTGCTATGAAGAACCACAGTGAAGCAGAGAGAAGAAGAAGGGAGAGAATAAATGGTCATCTCGATGCACTTCGTGGTCTTGTGCCCAGCAATGTGAAGATGGATAAAGCAACGTTATTGGGTGAAGTTATCAACCAAGTTAAGTTACTGAAGAAGAATGCAATGGAAGCAAGCAGAGGTTTTCTCATCCCAATGGATGATGATGAAGTTAAAGTTGAACCATACAACGATGAAGGAAGAGGAGGATCAATGTTTTACATGGCATCTATATGTTGTGATTACCGGCCGGAGCTACTATCTGACCTAAGACAAGCTCTTGATGGGCTTCAACTGCAATTAATGAGGGCAGAAATATCAACTTTGGGAGGAAGGGTGAAGAATGTATTTTTCTTTAGGTGCTGCAAAACAGAACATATTAATATTGGGGCATGCCAACTTGTTCCAAGTACTGTCCACCAGGTACTAAGTTCTGTACTGGAGAAGGCTTCTAGCTCACTGGAACACTCCTTGGGAATGTCACTTCGAAGTAAGCGTAGAAGACTTTGCTTCATTGAAACATCAACTTCCTCATGA 786 0.4275 MVYCSYNSVSSSGSDVSRLFDPTSHKIVDSNGVSQSRVVSPNSLVLNSQKGHPINSPMKIGKKEASEAKALAAMKNHSEAERRRRERINGHLDALRGLVPSNVKMDKATLLGEVINQVKLLKKNAMEASRGFLIPMDDDEVKVEPYNDEGRGGSMFYMASICCDYRPELLSDLRQALDGLQLQLMRAEISTLGGRVKNVFFFRCCKTEHINIGACQLVPSTVHQVLSSVLEKASSSLEHSLGMSLRSKRRRLCFIETSTSS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4774g00005 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Pral4774g00005 261 Gene3D - 67 130 IPR036638 GO:0046983
Pral4774g00005 261 Coils Coil 170 190 - -
Pral4774g00005 261 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
Pral4774g00005 261 PANTHER TRANSCRIPTION FACTOR BHLH30 34 256 IPR045847 GO:0003700|GO:0006355
Pral4774g00005 261 SMART finulus 78 127 IPR011598 GO:0046983
Pral4774g00005 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 124 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4774g00005 Pral-Chr4774 21535 25031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4774g00005 53 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.176 1.18e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4774g00005 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4774g00005 - - gmx:100804756 316.62