Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4771g00006 ATGGGGAAAGCAAAGATTGCGATAAAGAGGATAGACGATTCAGCAAACAGACAAGTGACTTTCTCAAAGAGAAGAACTGGGTTGCTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAAGTTGGGGTCATCGTCTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGCTTGAAGTCAATTATTGACCGCTACAATAAACACAAAGATGAGGAACAACATCCGCTTATGAATCCAGCTTCAGAAGCCAAGTTTTGGCGGAGAGAAGCAACAGTCTTGAGGCAACAACTACAACACTTGCAGGAACTGCACAGGCAATTCACGGGTGAACAACTTTCTGGTCTGGGAATCAACGAATTAAAAAGCTTGGAAAATCAACTGGAGATGAGTTTGAAAAAAGTCCAGATCAAGAAGGAGCAAATTTTAGCTGATGAGATTAAAGAGTTACAACACAAGGGACATCAAATTCGCCAAGAAAATGTACAACTCTACAAAACAATGGAAGTCATTAGTAAAGAAAATGCAGAATTACAGACGAAGATTTCTGAAGCAAGGGTTGTGAATGACGAATATGGGAATCCTAATAACCCTACATGCACTATTGATCTCCAGCTGAGCCAATCACAGTCTCAATGTAGTGAATCACCAACCAAAGCAATGGAGCTGGGATTACAGCTGCTTTAG 696 0.421 MGKAKIAIKRIDDSANRQVTFSKRRTGLLKKARELAILCDAQVGVIVFSSTGKLYEYGSSSLKSIIDRYNKHKDEEQHPLMNPASEAKFWRREATVLRQQLQHLQELHRQFTGEQLSGLGINELKSLENQLEMSLKKVQIKKEQILADEIKELQHKGHQIRQENVQLYKTMEVISKENAELQTKISEARVVNDEYGNPNNPTCTIDLQLSQSQSQCSESPTKAMELGLQLL 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4771g00006 231 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Pral4771g00006 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4771g00006 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4771g00006 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4771g00006 231 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Pral4771g00006 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4771g00006 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4771g00006 231 Coils Coil 121 144 - -
Pral4771g00006 231 Coils Coil 87 107 - -
Pral4771g00006 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 187 - -
Pral4771g00006 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4771g00006 231 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4771g00006 231 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4771g00006 231 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral4771g00006 231 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4771g00006 Pral-Chr4771 116363 120635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4771g00006 1 225 MADS-box Gene Family AT4G37940 54.222 1.65e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4771g00006 K-box 8.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4771g00006 K09264 - gmx:100805092 278.485