Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4771g00005 ATGGGAAAAGCCAAGATTGCGATTGAGAGGATTGACAATTCAACCAACAGACAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGTTCAAGAAAGCAAGAGAGCTTGCGATCCTCTGTGACGCACAGATTGGTGTTATTGTGTTCTCCAGCACCCACAAGCTCTATGAATATGGAAGCTCCAGCCTGAAGTCAATTATTGACCGATACACTAAGCAAATAGAGGAACATCATCATCCACTCATGAATTCCGACTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACGATCCTGAGGCAAGAACTTCAACATTTGCAGGAATTGCACAGGCATTAA 333 0.4354 MGKAKIAIERIDNSTNRQVTFSKRRSGLFKKARELAILCDAQIGVIVFSSTHKLYEYGSSSLKSIIDRYTKQIEEHHHPLMNSDSEAKFWQREATILRQELQHLQELHRH 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4771g00005 110 Coils Coil 87 107 - -
Pral4771g00005 110 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4771g00005 110 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4771g00005 110 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4771g00005 110 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4771g00005 110 FunFam Agamous-like MADS-box protein AGL62 13 78 - -
Pral4771g00005 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4771g00005 110 PANTHER SERUM RESPONSE FACTOR HOMOLOG 4 105 - -
Pral4771g00005 110 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pral4771g00005 110 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral4771g00005 110 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral4771g00005 110 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4771g00005 Pral-Chr4771 94868 98303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4771g00005 1 110 MADS-box Gene Family AT4G37940 66.667 5.84e-49 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral4771g00005 SRF-TF 2.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4771g00005 K09264 - sind:105177879 144.436