Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4771g00003 ATGGGGAGAGGGAAGATTGCGATTAAGAGGATTGACAATTCAACAAACAGGCAAGTCACTTTCTCAAAGAGACGAAGTGGTCTGCTCAAGAAAGCCATGGAGCTTGCTATCCTCTGTGACGCTGAAGTTGGGGTCATCGTCTTCTCCAGCACCGGCAAGCTCTATGAATATGGAAGCTCCAGTCTTAAGTCAATTATTGACCGCTATAATAGACACAAAGAGGAACAGCATCCACTTATGAATCCAGCTTCAGAAGCCAAGTTTTGGCAAAGAGAAGCAACAGTCTTGAGGCAACAACTTCAACATTTGCAGGAATTGCGCAGGCAATTGATGGGTGAACAAGTTTCTGGTTTGAGCATTAACGAAGTGAACAATTTGGAAAATCAACTGAAGATGAGTTTAAAACGTGTCCAGACCAAAAAGGATCAAATCTTAACTGATGAGATTAAAGAGCTACGACAAAAGGGAAATCAAATTAGTCAAGAAAATGTTGAACTCTGTCAAAGGATACAAGTCATCAAGAAGGAAAATGCAGAGTTAAAAAAGATTTGTGAGGAAAGAGCTATGAATGAAGAAAATGAGAGTTTCAGTGCACCATACACTAGCAACCTGCAGTTGAGCCAGCAGCCACAATCTGATGAAGCTAGTGAGCCACCAACCAAAGCAATGGAACTGGGATTACAGCTGCTTTAA 693 0.4156 MGRGKIAIKRIDNSTNRQVTFSKRRSGLLKKAMELAILCDAEVGVIVFSSTGKLYEYGSSSLKSIIDRYNRHKEEQHPLMNPASEAKFWQREATVLRQQLQHLQELRRQLMGEQVSGLSINEVNNLENQLKMSLKRVQTKKDQILTDEIKELRQKGNQISQENVELCQRIQVIKKENAELKKICEERAMNEENESFSAPYTSNLQLSQQPQSDEASEPPTKAMELGLQLL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4771g00003 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4771g00003 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4771g00003 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4771g00003 230 Coils Coil 149 169 - -
Pral4771g00003 230 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4771g00003 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4771g00003 230 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pral4771g00003 230 MobiDBLite consensus disorder prediction 194 216 - -
Pral4771g00003 230 MobiDBLite consensus disorder prediction 192 230 - -
Pral4771g00003 230 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pral4771g00003 230 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pral4771g00003 230 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4771g00003 230 Coils Coil 123 143 - -
Pral4771g00003 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 199 - -
Pral4771g00003 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4771g00003 230 Coils Coil 86 113 - -
Pral4771g00003 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4771g00003 230 Coils Coil 173 193 - -
Pral4771g00003 230 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral4771g00003 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4771g00003 Pral-Chr4771 61149 66264 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4771g00003 1 219 MADS-box Gene Family AT4G37940 54.795 4.70e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4771g00003 K-box 6.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4771g00003 K09264 - gmx:100805092 290.426