Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4760g00140 ATGCATAGGGCAGGATCCAGGAACAGCAGTTCTGAATCAATTGAGAATGGCTTGTCACGTCAGCTTCCCGGTATGGCTAATTCTGTGAGACAAAATCAATCATCTGCATCTGCACTGGATGATCAGCCTGCTGATGGCAATACGCCCTCTTGGCTATCGCAGTATGGTAGTGCCCATACTACCCCTAGTGAGTCTCGAAGATGGAGGCGGGTTTTCTCTGATACTGATAGTGATGGTTTTGATAACTGGAGTTCTCTTTATGGGGAGAATGAATCAAATGCAAGTATTAGGCGCTACAGAGTCCCCAGTGGTGAGACTGATTCCTTCTCTTTCAGTGCTTATGGAGCTGAGTCTGAGGTATCGATGGATAGATATAGTTTTGTGGGTACAGGAATCTTAAATTTACCAGATGAGGGAGATGAGTTTGATAGTGACACTGATATAGATCCAATGCATGCTGGCCTTAGCCATTGGAATTCTGATGATATGGAAGAAGAGGATGAGGATGAGGAAGAGGAAAGGGAATGGGAAGTAGCTGAGGCTGAGGAAGCGGAAGCCACTGCCCGCCTTCAAATATTTTTTACCTCAAGTCCAAGTGAGAGAAGTGACCTCATTAACTGGGGCCCACAGTTTAATTTTCCTGAATCTGAGGAATTATTAAGTAGGAGAGTTAGGGATAGATGGCAAACTTACACTGATCACAGCTCCAATTACTTGGAGGAGGCACGTTCACCTCCTTATGGTGCAAATTTTGGGGATTATCTTGATGCTAGGCAATTTGAAAATCTGCTAGAGCATCTTGCTGAGAATGATAACTCAAGACGAGGAGCACCTCCTGCAGCAGTGTCTTTTGTACATAGTCTGCCCTGTATTGTTATAAGCAAAGAACATGAGAAGCATGATGAACTTGTATGTGCCATTTGCAAGGATGCCTTGTCCATAGGCGCTGAAGTAAATCAGCTTCCCTGCTCTCACCTTTATCATGCCTGCTGCATTTTGCCATGGTTGAGTGCACGGAATTCATGCCCTCTTTGTCGTTACGAGCTCCCTACAGATGATAAGGAGTATGAGGAAGGAAAGCGCAATATTGACATTAGAAGTGAGATCCATGAAGCGCAGCAGCTAAATGTGATGGATGGCAATTCTTCTGATGGAGCTGAAGCAAATGAAGAGGATGGTACTATCCAAGCTGGAGGACAGCAAAGTGAGCTTGTGAACATGGTTCCTGTAGTTAATCCTTCTGCTGGGAGGGGCGGTAGAGGAAGATGGTTTTTCTTTGCTGCTGCTCCAATTGTTAGTCTAGTGGGTATTGTTATTGTCTTATGGTTAGGCAACCCTCTAATTGAAGGTAGTAGACAATTGGGTTGCCACAATTTACAGGGGCAAAATCAGCATCAGGTTCATGTTTCTGCCTCACCCAACCATAGGGAGGATAGAAGCAGAAGATGGTGGTGTCTCTTCTAA 1464 0.4488 MHRAGSRNSSSESIENGLSRQLPGMANSVRQNQSSASALDDQPADGNTPSWLSQYGSAHTTPSESRRWRRVFSDTDSDGFDNWSSLYGENESNASIRRYRVPSGETDSFSFSAYGAESEVSMDRYSFVGTGILNLPDEGDEFDSDTDIDPMHAGLSHWNSDDMEEEDEDEEEEREWEVAEAEEAEATARLQIFFTSSPSERSDLINWGPQFNFPESEELLSRRVRDRWQTYTDHSSNYLEEARSPPYGANFGDYLDARQFENLLEHLAENDNSRRGAPPAAVSFVHSLPCIVISKEHEKHDELVCAICKDALSIGAEVNQLPCSHLYHACCILPWLSARNSCPLCRYELPTDDKEYEEGKRNIDIRSEIHEAQQLNVMDGNSSDGAEANEEDGTIQAGGQQSELVNMVPVVNPSAGRGGRGRWFFFAAAPIVSLVGIVIVLWLGNPLIEGSRQLGCHNLQGQNQHQVHVSASPNHREDRSRRWWCLF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4760g00140 487 MobiDBLite consensus disorder prediction 151 173 - -
Pral4760g00140 487 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 188 350 - -
Pral4760g00140 487 SUPERFAMILY RING/U-box 287 352 - -
Pral4760g00140 487 SMART ring_2 305 345 IPR001841 -
Pral4760g00140 487 MobiDBLite consensus disorder prediction 1 70 - -
Pral4760g00140 487 FunFam E3 ubiquitin-protein ligase RING1-like 266 352 - -
Pral4760g00140 487 ProSiteProfiles Zinc finger RING-type profile. 305 346 IPR001841 -
Pral4760g00140 487 MobiDBLite consensus disorder prediction 380 399 - -
Pral4760g00140 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 363 IPR013083 -
Pral4760g00140 487 MobiDBLite consensus disorder prediction 1 62 - -
Pral4760g00140 487 Pfam Ring finger domain 305 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4760g00140 Pral-Chr4760 740121 743121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4760g00140 10 487 C3H Transcription Factor Family AT5G01980 43.333 4.99e-112 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4760g00140 - - gmx:100800933 608.216