Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4760g00031 ATGGACGTCGACGAAACTTCTAAACCCAAAGAGGAAAAGCTCTTATTGGTCATGTTAGTGGGAGCACCAGGAAGCGGCAAGTCCACTTTCTGCGAAGAAGTTATGCGTTCTTCTACTCGTCCTTGGGTTCGTGTTTGCCAGGATGTCATTGGAAATGGAAAAGCAGGAAATAAAGCTCAATGTCTAAGCTGTGCTGCTGGAGCATTGAAGGATGGAAAGAATGTGTTTATTGACAGGTGCAATCTTGATAGAGAACAGCGTTCAGGATTCACAGAGCTTGGTGGACCCCAAATAGATGTGCATGCTGTTGTGCTTGATCTTCCTGCAAAGCTTTGTATTTCTCGATCTGTCAAACGAACTGGGCATGAAGGAAATTTACAGGGTGGAAAAGCTGCTGCAGTGGTGAATAGAATGCTTCAAAAGAAAGAGTTGCCTTCGTTAAGTGAAGGGTTTAACCGGATAACATTTTGTCAGACTGAGAGTGATGTCAAAGTGGCTATTAACACGTACAGCACACTTGGGCCACTGGATAAGCTTCCACATGGATGTTTTGGACAGAAAAGTAAAGATTCCAAAGTTCAAGTGGATATAATGAAGTTCTTTAAAAAGGCTGAGGTTCCAATTGTTGCTGAGTCTAGAGGGAATAGTGGTGGAAATTTTACTTCTCAAAATAATGAGATGATAGATCCCTGCCGTAAAGATATGGAAAAAGTTTCATCAAATTCAGATAAAGCCAACTTAGAGTCAGTGAATTTAGAAAATATCTCAGTTGGTTCCTCTGTTTCTAATGTTGATCATGCTTTCATGGATGATCCTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTTGACCATCAGAAGGCAGCTGAGATTATTGTAGAGAAAGTCGCAGAGTTCTCAAATAAGCTTGCGAATGCTAGATTTGTTTTAGTTGACTTGACTCATGGTTCAAAGATTCTGTCATTAGTTAAAGCCAAAGCTGCTCAAAAGAACTTAGACCCCAGAAAGTTTTTTACCCATGTTGGGGATATTACTTGCCTCAAGTCCACGGGAGGCTTGCACTGTGCTGTGATAGCTAATGCTGCCAACTGGCGATTGAAACCTGGAGGTGGAGGGGTCAATGCTGCAATTTTCAAGGCTGCTGGTCCTATCTTGGTGTCTGCAACCAAAGAACGAGCACAATTGCTCTTGCCTGGGCATGCTGTTGCTGTCCCTCTACCATCATCTTCTCCTTTGTTTACTAGGGAGGGAGTAACCCATGTAATACATGTTCTTGGGCCAAATATGAATCCACAAAGGCCAGATTGTCTCAATAATGACTACAATAAAGGCTGCAAGATTCTAAGGGAGGCTTACACTTCACTATTTGAAGCTTTTGCATCAATCCTGAGGACTGGGACAGAGCAAAAGAGCAAGAGAGATGCTGATCATGGATTTGAAAAAAGCAAGAAATACAAGGGAAGTCAGGATGATGTTGAAGGGAACGGAGCTGGTACCAAGGTTGTGAACATAGATCCAAGTAATAAAAAAAATGATGGCAGCTTGAATAAGACATGGGGATCATGGGCTCAAGCTCTTCATCAAATAGCTATGCGTCCTGAGGAGCATAAGAATGAATTGCTTGAAATATCCGAAGATGTAGTTGTGCTGAATGACCTGTATCCTAAGGCACAGAAGCATGTTTTGGTGTTGGCAAGAACTAGAGGCCTCGATTGCCTGGCTGATGTTCAAAATGACCATCTTCACTTGCTAAAGAGGATGCATTCTGTGGGTCTAAAGTGGGCCGAGAAGTTCTTGCATGAGAATGCTTCACTAGTTTTTCGTCTTGGATATCACTCGGCTCCATCAATGCGACAACTTCATTTACATGTTATTAGCCAGGACTTTGACTCAAAACATTTGAAGAACAAGAAGCACTGGAACTCGTTCAACACTGATTTCTTTCGTGACTCAGTAGATGTAATTGATGAGGTCTCTAATCATGGGAAAGCAACCTTGAGAGATGATGACAAGTTGCTGTCCATGGAGTTGAGGTGTCATAGATGTAGAAGTGCACACCCTAACATTCCCAGGTTGAAATCTCATATTAGCAATTGCCAAGCTTCCTTTCCTTCTTGGTTTTTTCAAAACGGTCGTTTGATTCGTGCACAAGATGAAGTTAACATCAGTTCATAA 2187 0.4202 MDVDETSKPKEEKLLLVMLVGAPGSGKSTFCEEVMRSSTRPWVRVCQDVIGNGKAGNKAQCLSCAAGALKDGKNVFIDRCNLDREQRSGFTELGGPQIDVHAVVLDLPAKLCISRSVKRTGHEGNLQGGKAAAVVNRMLQKKELPSLSEGFNRITFCQTESDVKVAINTYSTLGPLDKLPHGCFGQKSKDSKVQVDIMKFFKKAEVPIVAESRGNSGGNFTSQNNEMIDPCRKDMEKVSSNSDKANLESVNLENISVGSSVSNVDHAFMDDPPTLAFPSISTSDFQFDHQKAAEIIVEKVAEFSNKLANARFVLVDLTHGSKILSLVKAKAAQKNLDPRKFFTHVGDITCLKSTGGLHCAVIANAANWRLKPGGGGVNAAIFKAAGPILVSATKERAQLLLPGHAVAVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPDCLNNDYNKGCKILREAYTSLFEAFASILRTGTEQKSKRDADHGFEKSKKYKGSQDDVEGNGAGTKVVNIDPSNKKNDGSLNKTWGSWAQALHQIAMRPEEHKNELLEISEDVVVLNDLYPKAQKHVLVLARTRGLDCLADVQNDHLHLLKRMHSVGLKWAEKFLHENASLVFRLGYHSAPSMRQLHLHVISQDFDSKHLKNKKHWNSFNTDFFRDSVDVIDEVSNHGKATLRDDDKLLSMELRCHRCRSAHPNIPRLKSHISNCQASFPSWFFQNGRLIRAQDEVNISS 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4760g00031 728 FunFam aprataxin isoform X2 524 704 - -
Pral4760g00031 728 Pfam Scavenger mRNA decapping enzyme C-term binding 531 643 - -
Pral4760g00031 728 Gene3D Leucine Aminopeptidase, subunit E, domain 1 221 320 IPR043472 -
Pral4760g00031 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 159 IPR027417 -
Pral4760g00031 728 SUPERFAMILY Macro domain-like 323 461 IPR043472 -
Pral4760g00031 728 MobiDBLite consensus disorder prediction 474 517 - -
Pral4760g00031 728 Gene3D - 2 171 IPR027417 -
Pral4760g00031 728 Gene3D - 525 707 IPR036265 -
Pral4760g00031 728 MobiDBLite consensus disorder prediction 474 494 - -
Pral4760g00031 728 Pfam C2HE / C2H2 / C2HC zinc-binding finger 648 701 IPR032566 -
Pral4760g00031 728 Gene3D Leucine Aminopeptidase, subunit E, domain 1 321 473 IPR043472 -
Pral4760g00031 728 Pfam AAA domain 16 141 - -
Pral4760g00031 728 SMART YBR022w_8 340 479 IPR002589 -
Pral4760g00031 728 FunFam Transcription factor bHLH140 321 468 - -
Pral4760g00031 728 SUPERFAMILY HIT-like 521 687 IPR036265 -
Pral4760g00031 728 PANTHER APRATAXIN-RELATED 275 703 - -
Pral4760g00031 728 FunFam Transcription factor bHLH140 4 172 - -
Pral4760g00031 728 ProSitePatterns HIT domain signature. 612 630 IPR019808 -
Pral4760g00031 728 SUPERFAMILY Macro domain-like 274 316 IPR043472 -
Pral4760g00031 728 ProSiteProfiles Macro domain profile. 328 566 IPR002589 -
Pral4760g00031 728 Pfam Macro domain 363 438 IPR002589 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4760g00031 Pral-Chr4760 211099 215702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4760g00031 5 718 C2H2 Transcription Factor Family AT5G01310 59.862 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4760g00031 K10863 - gmx:100786762 1077.39