Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4758g00064 ATGGCGGACTCGCATTCCACTGCACTTCAACCTCCTGTTGCTTCATCTTCCTCTTCTTCTACGGCCATTAGGGATGCTTCTGGAGCTACTCCGTCGACTTCAGGATCTTCACGAGTACGCCGCCAAGAGGAAAGACGAAGTCATCGTCCTCAATCTCAACCCCCTGGCCTAGACCAGCAGAATGTGAGCGTCGTCGATTGGACATATCAAAATGCGTCTTCAATAGCTAGGGATGATTCTTGGTCCTGCGTCGTTGTTCTTTTCACCTTTTGGTTCTTTGTGTCGATGACTATGATACTTGGAGTTTACGGGTCAATGAACCTCCTGCTTAGTCCAAGCGCTTCCATTCTTCTCCAACCTAGCCCCATATTCGTGCAATACATAAAGGTAGAAAACTTAGGGTCAAAGCCTGGAGTCATGCTTTATGGTACATACGGAACCCCCGCTCTTGATGTTTTTACTTTTTGGACAGAAACTCGTAACGTAACCGTTCAACCTGATGTGCATAAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAATATTTCATATCGCATGAGCTCTGAGAGCCCTTCTATTGTTCTCGTGATTGCAGAAGGGGGTGAAGGCCTCTCTCGGTGGCTGGAGGATCCATCATATCCTAATAGCACACTCTCATGGAACTTACTCGATGGAACTGGTATGATTACACAGGACATATTCAGTTCATCGGACTATTATTTGGCACTAGGAAATCTGGATGAGGAGGAGAGAGCGGAGGTGGAACTGATCATCAGAGTGAGGTCTGCCATGTATAATACAACAGATGCTTACTACAAATGTACTTTGACTAGTGACCCATGCGGTTTGAGTGTTTTCTTTCCTGATGGGAATGCAGCTGTCTTAACATCTCCTGCACCTCAACAGAATACATCCGGTAATCAGTGGTATGTCAAATTGTCCTATGGACCAAGATGGGTCACATATATTTTTGGCATGGGTGGATTGACTTTGCTTATGTTTTTGGCCTTCAACTACTTTAGCAAGCTGCACTATTCTCAAGATAGCGCAGGAGTTAGATATGAGGGAACAGCACCTCAAAGAGCCCCTTTGCTTTCTCCCAAAGATGATGATCTTTCCAGCTGGGGTTCATCATATGAATCCATGTCACAAGACGAGGAGGATCTTGACTTTCTTACAGGGGATTCCATTAATGGGAAGTCTATAGCTGATGGTGAAACCAGTAATAATACAAGGCGCCTTTGTGCAATATGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCTTGTGGACACTGCGTGGCTTGCTTTGAATGTGCAACAAGATTAGCAGAGGCAGAGGGTACTTGCCCGGTATGCCGTAGGAACATGAAGAAGGTGAGGAAGATATTTACTGTTTAA 1407 0.452 MADSHSTALQPPVASSSSSSTAIRDASGATPSTSGSSRVRRQEERRSHRPQSQPPGLDQQNVSVVDWTYQNASSIARDDSWSCVVVLFTFWFFVSMTMILGVYGSMNLLLSPSASILLQPSPIFVQYIKVENLGSKPGVMLYGTYGTPALDVFTFWTETRNVTVQPDVHKEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGGEGLSRWLEDPSYPNSTLSWNLLDGTGMITQDIFSSSDYYLALGNLDEEERAEVELIIRVRSAMYNTTDAYYKCTLTSDPCGLSVFFPDGNAAVLTSPAPQQNTSGNQWYVKLSYGPRWVTYIFGMGGLTLLMFLAFNYFSKLHYSQDSAGVRYEGTAPQRAPLLSPKDDDLSSWGSSYESMSQDEEDLDFLTGDSINGKSIADGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFECATRLAEAEGTCPVCRRNMKKVRKIFTV 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4758g00064 468 MobiDBLite consensus disorder prediction 1 37 - -
Pral4758g00064 468 Pfam Zinc finger, C3HC4 type (RING finger) 414 462 - -
Pral4758g00064 468 ProSiteProfiles Zinc finger RING-type profile. 417 456 IPR001841 -
Pral4758g00064 468 FunFam E3 ubiquitin-protein ligase APD2 406 467 - -
Pral4758g00064 468 PANTHER OS05G0521000 PROTEIN 58 468 - -
Pral4758g00064 468 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 467 IPR013083 -
Pral4758g00064 468 Pfam Domain of unknown function (DUF4792) 139 206 IPR032008 -
Pral4758g00064 468 Pfam Domain of unknown function (DUF4793) 230 337 IPR032010 -
Pral4758g00064 468 SUPERFAMILY RING/U-box 416 462 - -
Pral4758g00064 468 SMART ring_2 417 455 IPR001841 -
Pral4758g00064 468 MobiDBLite consensus disorder prediction 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4758g00064 Pral-Chr4758 517389 522900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4758g00064 390 465 C3H Transcription Factor Family AT3G06140 30.263 2.39e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4758g00064 - - tpra:123891971 569.311