Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4757g00022 ATGACGAGAAGGAAGATAGAAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCCATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCCAGTACAAGCACGAGGCAAGTGATTGCAAGGAGAAACCTGTACTCAGATGTAAGCCTTCTCAACACATACCAACCACTTCTTGAGTTTCAGGTAGAAGGTGAATATTTTAAGCTAGACAAGGAACTGAGAGAGAAGACTCGTGAACTGAGGCAGCTAAATGGAGAAGAACTTCAAGGATTGACTATAAAAGATCTAAAGAAGCTAGAAGATCTACTTAGCACATGCTTGCATCGTGTTTCGAAAGCCAAGGCTGAAGCAATGAAGCAGGACATCAGTATTCTTAAGAAAGAGGTTCAAAGGCTTGAGCAGGATCAAGACCAATCATTGTCCACCTCTCTCACAACGAGGTTACTCTTTACTTGA 537 0.4264 MTRRKIEIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIARRNLYSDVSLLNTYQPLLEFQVEGEYFKLDKELREKTRELRQLNGEELQGLTIKDLKKLEDLLSTCLHRVSKAKAEAMKQDISILKKEVQRLEQDQDQSLSTSLTTRLLFT 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4757g00022 178 Coils Coil 93 113 - -
Pral4757g00022 178 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Pral4757g00022 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4757g00022 178 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Pral4757g00022 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4757g00022 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4757g00022 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4757g00022 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 157 - -
Pral4757g00022 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4757g00022 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4757g00022 178 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4757g00022 178 Coils Coil 123 162 - -
Pral4757g00022 178 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Pral4757g00022 178 Pfam K-box region 89 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4757g00022 Pral-Chr4757 222635 235824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4757g00022 1 159 MADS-box Gene Family AT2G22540 49.068 6.75e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4757g00022 K-box 5.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4757g00022 - - pcin:129285682 225.328