Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4757g00021 ATGACGAGAAGGAAGATAGAAATAAAGAAGATCGAGAACGCCGCCGCGAGGCAGGTGGCTTTCTCAAAGAGAAGAAAAGGTCTATTCAAGAAGGCCATGGAGCTTTCAACTCTCTGCGATGCTGAGATTGCACTTTTAGTATTTTCAGCTTCTGGCAAACTCTTTGATTACTCTAGTACAAGCATGAGGCAGTTGATCGAAAGGAGAAACTTGTACTCAAATATTAATCTTGACGAATCACACCAGCCATCTCTTGAACTGCAGGTAGAAGGTGAATATTTTAAGCTTAAAAAGGAACTTAAAGAGAAGACTCGTGAAATAAGGCAGCTCAATGGAGAAGAACTGCAAGGATTGACCTTAAAAGACCTAAGGAAACTAGAAATTTTGCTTAACACGAGCTTGAATCTCATTTCAAAAGCAAAGGATCAAGTACATGAGCAGGAGATCAGTATTCTCAAGACCAAGGAAGCCAAACTCATGGAGGAAAACCAGAGACTAAACCAGGAAGTCAAAATGATGGAAGAAAACCAGAGATCGCAACAGGTTCAAAGACTTGAGCATGACCAAGGCCAGGCATTGGACGCCACTCAGAGAATGAGGTTACTCTTTCTCTGA 615 0.4163 MTRRKIEIKKIENAAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYSSTSMRQLIERRNLYSNINLDESHQPSLELQVEGEYFKLKKELKEKTREIRQLNGEELQGLTLKDLRKLEILLNTSLNLISKAKDQVHEQEISILKTKEAKLMEENQRLNQEVKMMEENQRSQQVQRLEHDQGQALDATQRMRLLFL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4757g00021 204 Coils Coil 93 113 - -
Pral4757g00021 204 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pral4757g00021 204 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Pral4757g00021 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4757g00021 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Pral4757g00021 204 Pfam K-box region 88 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4757g00021 204 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral4757g00021 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4757g00021 204 Coils Coil 149 183 - -
Pral4757g00021 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4757g00021 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4757g00021 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4757g00021 204 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4757g00021 204 FunFam Transcription factor, MADS-box 13 84 - -
Pral4757g00021 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4757g00021 Pral-Chr4757 199187 214288 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4757g00021 1 192 MADS-box Gene Family AT2G22540 48.469 9.83e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4757g00021 K-box 2.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4757g00021 - - pcin:129285682 291.197