Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4752g00061 ATGCCAACATTATTGGGAGTTGGGAACCAATCTGCAGCTGCACCTATTGGTTTCCCAGTGCCAAGTGGAAATAACCTATTAGATTTAAACCCTCCAGCAATCTCTCGAGAAAGGGACCTGGCTATTGTGATTAATAATGCTGGATTTCAGAACCAGCTCAGAACGTCACAAAGGTCTGAGGATCAATCTTATCTCAATATTGGGCCTCCTTTTACTGATGAAGCTAGAAACATTCTGTTAACTCAGGAATTACTGATCATTGATTATTCACTTCTATTATATTTGCCTGCGGATAATAATAATGAAGAGGACGATGAACAGGATGAGGAGACTGTAGCTGGATTGAGTGAAGAAGATGTTATGGCAAACCTTAGGCTTGAAGAGTTCCAAACCCCCACAGGGGTCACTCCAGAAAATGTTGATCCATGTTGCATATGTCAGGAGAACTACGCTGATGGGGAGGACATGGGGGTGCTAGATTGCCGCCACAAGTTTCACTACGATTGTATCAAAAACTGGCTGGGCATCAAGAACACCTGCCCCATCTGCGTACAGACAGGACTAGCTGTGTCATAG 576 0.4392 MPTLLGVGNQSAAAPIGFPVPSGNNLLDLNPPAISRERDLAIVINNAGFQNQLRTSQRSEDQSYLNIGPPFTDEARNILLTQELLIIDYSLLLYLPADNNNEEDDEQDEETVAGLSEEDVMANLRLEEFQTPTGVTPENVDPCCICQENYADGEDMGVLDCRHKFHYDCIKNWLGIKNTCPICVQTGLAVS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4752g00061 191 ProSiteProfiles Zinc finger RING-type profile. 143 183 IPR001841 -
Pral4752g00061 191 SMART ring_2 143 183 IPR001841 -
Pral4752g00061 191 Pfam Ring finger domain 143 183 IPR001841 -
Pral4752g00061 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 187 IPR013083 -
Pral4752g00061 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 112 187 IPR045191 GO:0061630
Pral4752g00061 191 SUPERFAMILY RING/U-box 142 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4752g00061 Pral-Chr4752 345301 348615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4752g00061 93 188 C3H Transcription Factor Family AT2G15530 39.806 3.90e-19 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4752g00061 - K22753 pcin:129284540 241.891