Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4752g00060 ATGGGAGATATGTATAGCTATGATCATACCGATAATCACAATTTCCCCATGTCTTCAACCTCATCTCTTTCCTCATCTTCACCTCAAGACGAAATCTCTCTTTTACTGCATCAGATTCTCCTTCGTTCGTCATCCTCGTCAGCATCATCGTCGCTGCTTGTGACCCACACGAATCCTCACCCTTCCGACCGATCATCACTTCTCCATGGTGGGATCTCCGTCGCTGATTCCTCCATTGGAGTAGGCGCTCCGAACGATGCTTTTCTTTCCTCTCCGGGGACCTGTACGTTGGCCAATATGAAGGGCAGTTCAGCTGTAGACATGCCTTCATCTCTCGGAGTAAGTGAGAATGAGTTGGACGAGTATGATTGCGAGAGTGAGGAGGGGATCGAAGCATTGGTGGAACAGCAGCCGGTAAAGTCAGTTCCTCCTCGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCAAACAAGACAGACAAGGCTTCGATGCTGGATGAAGCTATTGAATACCTGAAACAACTTCAGCTCCAAGTACAGATGCTGTCAATGAGAAATGGTTTGAGTTTGCATCCCATGTGCTTTTCTGAAGACTTGCAGGCTCAGCGATTTGGTCAGATGAGGTGTGAGTTCAGTGAAGAAAACAGGTCTTTGCCTGTAAACACGGCAACTACTCTGCCTTTGACCCAAGAAAACCCCTTGCAATATGAGTCGAAATCCAGTCTACCTGACAAACTCAGCACACAGGACCAACGATTAGTGCCTCCTCCATCGTATAAAATTAACCCAGAAACTTCTTACGGGCTAGAATCCCCAGTTCTTCCGCATATAAGATCCTTTCCACAGAAAAGAACTTCCGAGATGCGTAACAATGGGATATTGCGGCAGCAGAAATTAAATGTGAGCCATTCAGATTCCAATCCTTTAGGTGGTTATCAAGTATCACACACCTTTGATATGCAAACGTCCGAGCAGAAAGACAAGGGCTTTGAAACAGCTGCGGGGAAAGATCAATTGGCATTGATCCTAAGAAATAGCGTAAACAACGTTACTATGACATCGCGGCTTCGGAGATTACAGGCGGGAGAAAGTATATGCGAAGACGACATCAAGACAGAGAAACCTCGTTTGTGA 1212 0.4554 MGDMYSYDHTDNHNFPMSSTSSLSSSSPQDEISLLLHQILLRSSSSSASSSLLVTHTNPHPSDRSSLLHGGISVADSSIGVGAPNDAFLSSPGTCTLANMKGSSAVDMPSSLGVSENELDEYDCESEEGIEALVEQQPVKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMCFSEDLQAQRFGQMRCEFSEENRSLPVNTATTLPLTQENPLQYESKSSLPDKLSTQDQRLVPPPSYKINPETSYGLESPVLPHIRSFPQKRTSEMRNNGILRQQKLNVSHSDSNPLGGYQVSHTFDMQTSEQKDKGFETAAGKDQLALILRNSVNNVTMTSRLRRLQAGESICEDDIKTEKPRL 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4752g00060 403 MobiDBLite consensus disorder prediction 150 164 - -
Pral4752g00060 403 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 149 212 IPR036638 GO:0046983
Pral4752g00060 403 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Pral4752g00060 403 MobiDBLite consensus disorder prediction 1 27 - -
Pral4752g00060 403 MobiDBLite consensus disorder prediction 136 164 - -
Pral4752g00060 403 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 321 IPR031066 -
Pral4752g00060 403 CDD bHLH_AtPIF_like 152 214 IPR047265 -
Pral4752g00060 403 Coils Coil 191 211 - -
Pral4752g00060 403 FunFam Basic helix-loop-helix transcription factor 147 210 - -
Pral4752g00060 403 MobiDBLite consensus disorder prediction 246 293 - -
Pral4752g00060 403 MobiDBLite consensus disorder prediction 11 27 - -
Pral4752g00060 403 MobiDBLite consensus disorder prediction 246 281 - -
Pral4752g00060 403 SMART finulus 158 207 IPR011598 GO:0046983
Pral4752g00060 403 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Pral4752g00060 403 Gene3D - 147 211 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4752g00060 Pral-Chr4752 340287 343367 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4752g00060 117 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.893 3.12e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4752g00060 HLH 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4752g00060 - - pcin:129321987 468.388