Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4752g00058 ATGGCCGATGAGCAGCCTTCAACGACTTCCAGACGAAGGGGAAAAGGTGCCGAGGCATCGGCGCGTTCCGAAGCTTTGGAACGTCTAAAAGCCCGACTTCGTGGCGGTCGCCGTTCAGACACCGATGGATATCAGATTAAGCTGGATAACCCGATTTATGATACTGTCGCCGAGGACGAGTACAATGCACTGGTCGCCAAGCGCCGCGAAGAAGCCAGAGGCTTCATTGTGGACGATGACGGTCTTGGGTACGGGGACGAAGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCTCTCTGTCTTCCGATGAATCCGGTGGCGAAACTGAAAAGCCCAAAAGGAAGAGACAAGAAAAGAAAGATCCGCAACCTAAAAGGCCATCGTCTTCGCTATCGGCTGCGGCGGCGATGATAGGAGCGCAGAGGTTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAGACTAAAGGACTTTCTTGTGATAGTATTGTTGATGATGTCATCGCAGAGTTCGCCCCGGATGAGACTGACAGATTAAGGCGTAGACGCGGGCCAACAAATCCTTCAAGTGCCAACAATGCTCTGCCGGTTGACAATATTAAGAGAGAGGAATCAGCGATTGGATGTCATGATCCGACGAGAGATCTTTTGTCGTCGGATGCTGTCGCAAATGGCAATTATGAATCTACTGGAGTTGTGAAAAATGATGGTTTTGCCTTGGGTTCTGAACAAAATTACGGAGGAGTCAAAGTAGAGGCAACTACTAAAGAATCAGAAGATGGGAGAAATATTGATTCCGACGATGGTCTGGCATCAGCCATGCAAACCCATAGTGGTCCAACCAACGGAGACGTGACTGAAGAAAAAATGTTAAAGGGTGTCGAGATAGAAGCCAAACAAACAGTGGAGAAGGAGGTATTTCTTCTGAATGCGAAGGTTAAAGAAGAAGACCCTGCACTGAGTGCGACTATAGGTTGGCAGGCAGCAAAGAGCGGGGGGGATGTGAATGTTGTTGATTCAAAGGTGGCCGACGAAGTTTTAAATAATGAAGAAAACTTAGAGTTCAATCTGGAGGCTGATGGGTCGCTGCCGTTCTACATACTTGATGCTCATGAGGAATTCTATGGAGCTAACATGGGTACACTGTATTTGTTCGGGAAGGTCAAATCAGGTAGTTCGTATCAAAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGTCGTCCTTTACATCACACTGGTGAAATGATGGCACTCGAGAAGGATGTTGAAGAGTCTCGGATTTCTCGCACAGACTTTCAAAAAAAGCTGCAAGATATGGTGTCCGGTTTAAAGAATGAGATAGCAAAGCAGCTGTTAAATCTGAATGCTTCAACCTTTAGCATGAAACCTGTTAAGAGGAAGTATGCATTTGAACGTTCTGAAATACCTGCTGGTGAAAATTATGTGCTGAAAATAAATTATCCATTCAAGGACCCACCTCTTCCAGCAGATCTGAAAGGAGAGGGTTTCTGTGCTCTTCTAGGAACTCATTGCAGTGCGTTGGAGCTTTTCTTAATTAAAAGAGAGATAAAGGGGCCCTCATGGCTACTGGTTTCAAACTTTTCTTCCCGGCCTGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCTCCTAAAGACATAAGGATTTCAACTTCCTCCAAATCCAGTTTTGAGATTCCTCCCGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAGCAAAACTTAAATGAGATTGTCTCTGCATCCGTTGTTTGCTGCCGCAGGGTCAAGATTGACACTCCCATGTTGGCTTCGGAATGGAAGAGACCTGGATTACTGACCCATTTTACCGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAACAAGGAAGTTACAGACCGAAACGCTAAAGCTGGCTCAAATGTTCTGTGTGTTGAGAGCAGTGAAAGGGCTTTACTAAACCGCCTGATGATAGAATTGCACAAGTTGGATAGTGATGTTCTTGTTGGACATAACATTTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCTAAAGTGCCAAGCAGCATGTGGTCCAAAACAGGCCGCCTTAAACGGTCTGTGATGCCTAAACTTACCAGAGTAAGCACTGTTTTTGGGTCTGGAGCTACTCCTGGCATCTTGTCATGCATTGCTGGTCGGCTTCTTTGTGATACATACTTGTGTGCTCGTGACCTTTTAAAGGAGGTTAGCTACTCTTTATCTCAACTATCAAAAACTCAGCTGAATAAAGTTCGAAAAGAGGTTGCTCCACATGATGTTCCAAAAATGTTCCAATCAGCAGAATCCCTTGTGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTATCTATGGAACTCATGTTTCATTTGAGTGTTCTCCCCCTCACACGTCAGCTGACTAATATTAGTGGTAACTTGTGGGGAAAAACACTTCAGGGTGCGAGGGCACAGAGAGTCGAGTATCTGTTGTTGCATGCTTTCCATGCAAAGAAATATATCGTGCCAGACAAGATTCCTTCCCATACCAAAGAAACAAAATTGACAAAACGCAGAGGAACTCATGGCGTTGAGGATGCTGGCTTTGACGAAGTTATTGACAATAAAAACTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAGGACTCCGTCCTACGCTGGAGGACTGGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTTTTGGACTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTACAGATGGATCTTTTCCTCGTCTGCCATCTAGTAAAACATCTGGAGTTTTGCCAGAGTTGCTGAAAAATCTGGTTCAAAGGAGGAGAATGGTGAAGTCATGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTGGACGTTCAGCAACAAGCACTTAAGCTTACTGCAAACAGTATGTACGGATGCCTTGGATTTGCTAATTCAAGATTTTATGCAAAACCGCTGGCTGAGCTTATAACCCTGCAAGGAAGGGAGATACTACAAAGTACTGTTGATCTTGTTCAGAATAACCTGAACTTAGAGGTGATCTATGGCGACACTGATTCAATCATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAAGCAATGGCTGGAAAAGTGATTCAAGAGGTTAACAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTCTGTACAAGAGAATGCTACTGCTTAAGAAAAAGAAATATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACGCCATATGAGGTTATTGAACGTAAAGGTCTGGATATTGTTCGTCGTGATTGGAGCCTATTATCTAAAGAAATAGGAGATTTTTGCCTAGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAATCAATTCACAGCTCTCTTTATAAGGTGCAAGAAGAGATGAGGAGTGGACAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACAGAGATTGAAGCAAAAGGGCTACTCCACTGGGTGCTCTGTCGGTGATGCAATCCCCTACATTATTTGCTATGAGCAGCAGGGCAGTAATTCAAGCAGTGGAACAAGTGTTGCTCAACGTGCCAGACATCCTGAGGAACTAAAACAAGAACAAGGGAATTGGATGATTGATATTGATTATTACCTGTCACAACAGCTTCATCCCGTTGTTTCACGTCTCTGTGCATCAATTCAGGGAACGAGTCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCATCAAAATTTCAACACAAGTCAAGTGAAGCCTTCAATGGTTATCCCTCAAATTCACTCTTGTTTGCTGCTGATGACAAAGAGAGGTATCAAGGGTGTCAGCCGTTAGTTTTGTCATGTCCTAGCTGCTCTGATACTTTTGACTGTCCTCCTATCTCTAAATCTGTTGGAAGCGAAAAGCCGACAAGCTCAGGCATGGAGGAATCAGGCTATAATTTCTGGCGTAAGCTGCGCTGTCCTAAATGTCCAGAAGAAGATGGTGTCGGCAGACTTTCTCCGGCAATGATTGCCAATCAGGTCAAAAGGCAAGCAGATAAGTTCATTTCAATGTACTACAGAGGCTTGTTAATGTGCGACGACGAAACCTGTAAGTATTCGACACGAAGTATCAACCTCCGGCTGGTTGGTGATTCTGAAAGAGGAACAGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTTCTAAGACAGTACACGGAGGCAGACTTGTATAAACAGCTCTCGTATTTTTGCCATGTGCTGGATACTGTTTCCTGGATAGAAAAGATGGAGGTTAAATCTAGGATACCACTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGATTGATCTGGCAGCATCAACGATACAGGAGATTCGGGATCGGTGCGCCTTTGGGTGGGTACAGATGCAGGACTTGGTCATCACTGTATGA 4656 0.4396 MADEQPSTTSRRRGKGAEASARSEALERLKARLRGGRRSDTDGYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFSLSSDESGGETEKPKRKRQEKKDPQPKRPSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKTKGLSCDSIVDDVIAEFAPDETDRLRRRRGPTNPSSANNALPVDNIKREESAIGCHDPTRDLLSSDAVANGNYESTGVVKNDGFALGSEQNYGGVKVEATTKESEDGRNIDSDDGLASAMQTHSGPTNGDVTEEKMLKGVEIEAKQTVEKEVFLLNAKVKEEDPALSATIGWQAAKSGGDVNVVDSKVADEVLNNEENLEFNLEADGSLPFYILDAHEEFYGANMGTLYLFGKVKSGSSYQSCCVVVKNMQRCVYAIPSRPLHHTGEMMALEKDVEESRISRTDFQKKLQDMVSGLKNEIAKQLLNLNASTFSMKPVKRKYAFERSEIPAGENYVLKINYPFKDPPLPADLKGEGFCALLGTHCSALELFLIKREIKGPSWLLVSNFSSRPASQRVSWCKFEVIVDSPKDIRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASVVCCRRVKIDTPMLASEWKRPGLLTHFTVVRKLDGGIFPLGFNKEVTDRNAKAGSNVLCVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKTGRLKRSVMPKLTRVSTVFGSGATPGILSCIAGRLLCDTYLCARDLLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQSAESLVELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHTKETKLTKRRGTHGVEDAGFDEVIDNKNYDNDAPDSDHGKSKRTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTDGSFPRLPSSKTSGVLPELLKNLVQRRRMVKSWMKTASGLKVQQLDVQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLYKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSTGCSVGDAIPYIICYEQQGSNSSSGTSVAQRARHPEELKQEQGNWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSSEAFNGYPSNSLLFAADDKERYQGCQPLVLSCPSCSDTFDCPPISKSVAXSEKPTSSGMEESGYNFWRKLRCPKCPEEDGVGRLSPAMIANQVKRQADKFISMYYRGLLMCDDETCKYSTRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYKQLSYFCHVLDTVSWIEKMEVKSRIPLEKELSKIRPMIDLAASTIQEIRDRCAFGWVQMQDLVITV 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4752g00058 1552 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Pral4752g00058 1552 SMART polmehr3 583 1084 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral4752g00058 1552 Pfam DNA polymerase family B 842 1305 IPR006134 GO:0000166|GO:0003677
Pral4752g00058 1552 PRINTS DNA-directed DNA-polymerase family B signature 1070 1078 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral4752g00058 1552 PRINTS DNA-directed DNA-polymerase family B signature 1017 1029 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral4752g00058 1552 PRINTS DNA-directed DNA-polymerase family B signature 941 954 IPR006172 GO:0000166|GO:0003676|GO:0003887
Pral4752g00058 1552 CDD POLBc_alpha 917 1321 IPR045846 GO:0003887|GO:1902975
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 902 919 - -
Pral4752g00058 1552 FunFam DNA polymerase 410 536 - -
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 1 44 - -
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 902 924 - -
Pral4752g00058 1552 Gene3D - 370 569 - -
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 76 137 - -
Pral4752g00058 1552 Gene3D - 1148 1334 IPR042087 -
Pral4752g00058 1552 FunFam DNA polymerase 1148 1335 - -
Pral4752g00058 1552 FunFam DNA polymerase 583 897 - -
Pral4752g00058 1552 SUPERFAMILY DNA/RNA polymerases 867 1320 IPR043502 -
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 261 289 - -
Pral4752g00058 1552 FunFam DNA polymerase 1344 1538 - -
Pral4752g00058 1552 Pfam DNA polymerase family B, exonuclease domain 399 777 IPR006133 -
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 274 288 - -
Pral4752g00058 1552 SUPERFAMILY Ribonuclease H-like 365 871 IPR012337 -
Pral4752g00058 1552 Gene3D - 583 895 IPR036397 GO:0003676
Pral4752g00058 1552 NCBIfam DNA polymerase (pol2) 52 1303 - -
Pral4752g00058 1552 Coils Coil 1098 1118 - -
Pral4752g00058 1552 FunFam DNA polymerase 982 1031 - -
Pral4752g00058 1552 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1550 - -
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 106 125 - -
Pral4752g00058 1552 CDD DNA_polB_alpha_exo 583 834 - -
Pral4752g00058 1552 Gene3D Helix hairpin bin 980 1031 - -
Pral4752g00058 1552 Pfam DNA Polymerase alpha zinc finger 1345 1548 IPR015088 GO:0003887|GO:0006260
Pral4752g00058 1552 MobiDBLite consensus disorder prediction 1 45 - -
Pral4752g00058 1552 Gene3D DNA Polymerase alpha, zinc finger 1344 1537 IPR038256 -
Pral4752g00058 1552 Gene3D Palm domain of DNA polymerase 910 1135 IPR023211 -
Pral4752g00058 1552 ProSitePatterns DNA polymerase family B signature. 1072 1080 IPR017964 GO:0000166|GO:0003676
Pral4752g00058 1552 Gene3D - 410 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4752g00058 Pral-Chr4752 326976 339063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4752g00058 1 1550 Core DNA Replication Machinery Family AT5G67100 60.521 0.0 1868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4752g00058 K02320 - zju:107424534 2280.75