Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4752g00039 ATGGCTTCGCAAAGATCGGTGCCGGCGCCGTTTCTGACGAAGACGTACCAGTTGGTGGATGATCCGGCCACCGACGACGTCATATCGTGGGGTGAAAGTGGGAACACGTTCGTGGTGTGGAAGCATGCGGATTTTGCCAAGGATTTGCTTCCCAAGTATTTCAAGCACAACAACTTCTCTAGCTTCGTACGCCAGCTCAACACCTATGGATTCCGTAAGATTGTTCCTGACAAATGGGAATTCGCCAACGAATATTTTAAACGAGGACAGAAAGAGCTGTTGGCGGAGATCAAACGTCGGAAACCCGTGGTGCAATCCGCGGCGCAGGCGCCTGCGGCGTCGAACTCCGGCGGGGATGACATGGGATCGACCTCGACTTCTTCTCCAGATTCGAAGAATCTAGGAACGGTGGAGACGACGAGTTCTCAAATGGCGAATTTATCGGGGGAGAACGAGAAATTGAGAAAGGATAACGAGGTGCTGAGCTGGGAACTGGCGCAGGCGAAGAAGCGGTGCGAGGAGCTGATTAGTTTTCTGAAGGAGCACGTGAAGATGGGTCAGGATCAGATCCATCGGATCATGCGGCAAGGAAGCTGTGGGTCCAGCCGCAAACATGAAGGTGAAGATGACGACGAAAACGCGGTAGGTGAAAGGGAGGGATCTGGTGGGGAAAGCTTGAAGCTGTTTGGGGTTAGGTTGAGCACAAGCCATGGCAGCGTCGCCAACACCAAGAGAGGGCGCGAAGACCAAATAGGGTGTGGTGGCCCTCACTCTAATAAGCAGCTGAAAGCTGTTGACTTTGTTTCGCCCGTGATGATGAAGAGCAGCAAGGTCTGCAACTGA 843 0.5314 MASQRSVPAPFLTKTYQLVDDPATDDVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQKELLAEIKRRKPVVQSAAQAPAASNSGGDDMGSTSTSSPDSKNLGTVETTSSQMANLSGENEKLRKDNEVLSWELAQAKKRCEELISFLKEHVKMGQDQIHRIMRQGSCGSSRKHEGEDDDENAVGEREGSGGESLKLFGVRLSTSHGSVANTKRGREDQIGCGGPHSNKQLKAVDFVSPVMMKSSKVCN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4752g00039 280 PRINTS Heat shock factor (HSF) domain signature 11 34 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4752g00039 280 PRINTS Heat shock factor (HSF) domain signature 49 61 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4752g00039 280 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4752g00039 280 MobiDBLite consensus disorder prediction 197 225 - -
Pral4752g00039 280 Pfam HSF-type DNA-binding 11 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4752g00039 280 Gene3D - 3 101 IPR036388 -
Pral4752g00039 280 SMART hsfneu3 7 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4752g00039 280 Coils Coil 279 280 - -
Pral4752g00039 280 ProSitePatterns HSF-type DNA-binding domain signature. 50 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4752g00039 280 FunFam Heat stress transcription factor B-4 3 101 - -
Pral4752g00039 280 SUPERFAMILY "Winged helix" DNA-binding domain 8 100 IPR036390 -
Pral4752g00039 280 MobiDBLite consensus disorder prediction 104 152 - -
Pral4752g00039 280 Coils Coil 137 171 - -
Pral4752g00039 280 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 208 IPR027725 -
Pral4752g00039 280 MobiDBLite consensus disorder prediction 108 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4752g00039 Pral-Chr4752 214401 217325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4752g00039 2 280 HSF AT4G36990 52.431 5.17e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4752g00039 HSF_DNA-bind 2.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4752g00039 K09419 - qsa:O6P43_033819 343.969