Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4748g00028 ATGGCGGCGTCGATTTCTACACCGATGGTTCAGGCCAATGGTCCTCCCGCGCCGATGTCGCCAACGGCAGCGGCATTGTCTGCTGGACAGTTCGCAAATATGTCATTGTACGTTGGTGATCTAGACCCGAATGTGAATGAAGGGCAGCTCTATGATCTGTTCAACCAAGTGGCGAATGTTGTCTCCGTCAGGGTTTGTAGGGATCAGACCAGGCGATCCTCTCTTGGTTACGCCTATGTCAACTACGGCAGCGCCCAGGATGCGGCTAATGCCATGGAACTTCTCAATTTTACCCCACTGAATGGGAAACCCATTCGTATAATGTTCTCTCATAGAGATCCTAGCATTCGGAAAAGTGGATATGCTAATGTGTTCATTAAGAACCTGGACACATCAATAGATAACAAGGCATTACATGACACTTTTGCTGCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACAGCTCTGGCCAGCCAAAAGGGTATGGTTTTGTACAGTTTGAGAATGAGGAATCTGCACAAAATGCCATCAAACAGTTGAATGGAATGTTGATAAATGATAAACAAGTCTATGTTGGACTCTTTGTTCGGCGCCAGGAAAGGGCTCGTGCAAATGGATCACCAAAGTTTACTAATGTTTATGTGAAAAATTTTTCTGAAACATACACTGATGAGGACCTCAAACAGCTTTTCGGGCCATATGGTGCAATAACTAGTGCTGTTGTCATGAAAGATGCAAATGGGAAGTCTCGATGTTTTGGGTTTGTTAATTTCCAAAGCCCAGAATCAGCAGCTGCTGCAGTTGAGAGGCTAAATGGAACCACTGTCAATGATGACAAGGTGTTATATGTAGGGAGAGCTCAGAAGAAAGCAGAGAGAGAGGCGGAGTTGAAGGCAAAATTTGAACAGGAAAGAATTAGTCGATATGAGAAGTTGCAAGGTGCTAATCTGTACTTGAAAAATCTCGATGATAGCATCAATGATGACAAACTGAAGGAGTTATTTTCTGAGTTTGGGACTATTACATCATGCAAGGTTATGCTGGATTCACATGGGCACAGCAAGGGCTCTGGTTTTGTGGCTTTTTCTACGCCTGAGGAAGCAAGTAAAGCTTTGAACGAAATGAATGGAAAAATGGTAGAGCGAAAACCTCTTTATGTTGCTGTGGCCCAGCGAAAAGAAGAGAGAAAGGCCCTGCAGGCTCATTTTGCTCAAATTCGTGCACCTGGTAGAATTGGACCCTTACCTGCTGGAATTCCTGGATATCATCCTGGGGCGCCTAGACTTGCCCCTCAGCAGTTGTACTATGGTCAGGGAACACCTGGTCTGATGCCACCTCAACCAGCTGGATTTGGTTTCCAGCAACAACTCTTGCCCGGAATGCGCCCTGGTGTAGCTCCAAATTTCATTATGCCATACCAACTTCAGAGACAGGTTCAGCCCGGGCAAAGGATGGGGGTTCGACAGGGTAGAAATTTCCAGCATGTGCAGCAGAACCAGATAATGCATCGGAACTCCAATCAAGGGTTTAGATATGTGAGCAACACTCGAAATGGCGTGGACCCATCTATCGTTCCCCAAGGCGTAGTGAGTCCAATGATGCCATTGCCCTTTGATGGCTCTGGGGTTACTTCAGCTCCCATTGATAATCTGCGACCCGGTGCGCTTTCTACAACGCTTGCCTCGGCTTTGGCCTCTGCTACACCAGAAAATCAGCGCATGATGCTGGGTGAACATCTGTATCCCCTCGTAGAGCGGCTTGCACCAAATCATACAGCAAAAGTGACAGGGATGTTATTGGAAATGGACCAATCCGAGGTTATCCATCTCATTGAATCTCCTGAAGACTTGAAAATAAAGGTGTCTGAGGCAATGCAAGTCCTGCATGAAGCTGCATCGGGCACTGAAGTTGGCGAACAGCTCGGCTCACTGGCACTGAATGAATGA 1953 0.467 MAASISTPMVQANGPPAPMSPTAAALSAGQFANMSLYVGDLDPNVNEGQLYDLFNQVANVVSVRVCRDQTRRSSLGYAYVNYGSAQDAANAMELLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDTSIDNKALHDTFAAFGTVLSCKVAVDSSGQPKGYGFVQFENEESAQNAIKQLNGMLINDKQVYVGLFVRRQERARANGSPKFTNVYVKNFSETYTDEDLKQLFGPYGAITSAVVMKDANGKSRCFGFVNFQSPESAAAAVERLNGTTVNDDKVLYVGRAQKKAEREAELKAKFEQERISRYEKLQGANLYLKNLDDSINDDKLKELFSEFGTITSCKVMLDSHGHSKGSGFVAFSTPEEASKALNEMNGKMVERKPLYVAVAQRKEERKALQAHFAQIRAPGRIGPLPAGIPGYHPGAPRLAPQQLYYGQGTPGLMPPQPAGFGFQQQLLPGMRPGVAPNFIMPYQLQRQVQPGQRMGVRQGRNFQHVQQNQIMHRNSNQGFRYVSNTRNGVDPSIVPQGVVSPMMPLPFDGSGVTSAPIDNLRPGALSTTLASALASATPENQRMMLGEHLYPLVERLAPNHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMQVLHEAASGTEVGEQLGSLALNE 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4748g00028 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 558 635 IPR002004 GO:0003723
Pral4748g00028 650 SUPERFAMILY RNA-binding domain, RBD 11 118 IPR035979 GO:0003676
Pral4748g00028 650 CDD RRM2_I_PABPs 120 195 IPR045305 -
Pral4748g00028 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Pral4748g00028 650 FunFam Polyadenylate-binding protein 203 299 - -
Pral4748g00028 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Pral4748g00028 650 FunFam Polyadenylate-binding protein 27 122 - -
Pral4748g00028 650 Gene3D - 27 122 IPR012677 -
Pral4748g00028 650 SMART rrm2_1 123 195 IPR003954 GO:0003676
Pral4748g00028 650 SMART rrm2_1 214 286 IPR003954 GO:0003676
Pral4748g00028 650 SMART rrm2_1 35 108 IPR003954 GO:0003676
Pral4748g00028 650 SMART rrm2_1 318 390 IPR003954 GO:0003676
Pral4748g00028 650 SUPERFAMILY PABC (PABP) domain 496 634 IPR036053 GO:0003723
Pral4748g00028 650 Coils Coil 286 314 - -
Pral4748g00028 650 Gene3D - 300 407 IPR012677 -
Pral4748g00028 650 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 630 IPR006515 GO:0003723
Pral4748g00028 650 CDD RRM3_I_PABPs 212 292 - -
Pral4748g00028 650 Gene3D - 198 299 IPR012677 -
Pral4748g00028 650 CDD RRM4_I_PABPs 316 394 - -
Pral4748g00028 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 199 IPR000504 GO:0003723
Pral4748g00028 650 FunFam Polyadenylate-binding protein 300 404 - -
Pral4748g00028 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Pral4748g00028 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Pral4748g00028 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 282 IPR000504 GO:0003723
Pral4748g00028 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 192 IPR000504 GO:0003723
Pral4748g00028 650 Gene3D - 123 196 IPR012677 -
Pral4748g00028 650 SMART rrm1_1 318 390 IPR000504 GO:0003723
Pral4748g00028 650 SMART rrm1_1 35 108 IPR000504 GO:0003723
Pral4748g00028 650 SMART rrm1_1 214 287 IPR000504 GO:0003723
Pral4748g00028 650 SMART rrm1_1 123 195 IPR000504 GO:0003723
Pral4748g00028 650 Pfam Poly-adenylate binding protein, unique domain 566 630 IPR002004 GO:0003723
Pral4748g00028 650 FunFam Polyadenylate-binding protein 555 636 - -
Pral4748g00028 650 Gene3D - 557 635 - -
Pral4748g00028 650 SMART poly_2 570 633 IPR002004 GO:0003723
Pral4748g00028 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Pral4748g00028 650 FunFam Polyadenylate-binding protein 123 196 - -
Pral4748g00028 650 SUPERFAMILY RNA-binding domain, RBD 313 415 IPR035979 GO:0003676
Pral4748g00028 650 SUPERFAMILY RNA-binding domain, RBD 123 293 IPR035979 GO:0003676
Pral4748g00028 650 PANTHER RNA BINDING PROTEIN 33 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4748g00028 Pral-Chr4748 106070 109737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4748g00028 33 649 Eukaryotic Initiation Factors Gene Family AT1G71770 59.618 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4748g00028 K13126 - gmx:100783163 1063.14