Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4747g00004 ATGGATCCTCATGCTGAAGAATTTCCTCAATACATCCATATAACGCAGAATGAATTTTTAAACAGAAGGCATGTGAAGCAGAGGGAGGAGGATATTGCTATATGTGAATGCAAATATAATCCTAGCGACCCTGATAGTGCATGTGGGGATGGCTGTCTTAATGTACTGACCAGCTCTGAATGCACCCCCGGCTATTGCCCGTGTGGTGTCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTCAAAACTGAAGGCCGGGGATGGGGTCTTTTGGCTGATGAGAATATTAAGGCAGGCCAATTTATCATCGAATATTGTGGAGAAGTAATTTCATGGAAAGAAGCCAAGCGAAGAGCCCAGGCTTATGAAATTCAAGGTCTTAAGGATGCATTCATTATTTGTCTTAACGCTTCTGAATCCATTGATGCAACTAGAAAGGGAAGCCTTGGTAGATTTATAAATCATTCATGTCAGCCAAATTGTGAGACAAGGAAATGGAATGTCTTGGGTGAGATAAGAGTTGGAATATTTGCAACACAAGATATACCTGTTGGAGCTGAACTGGCATATGATTATAATTTTGAGTGGTTTGGTGGTGCAAAGGTTCGTTGCCTCTGTGGTGCAGCCAAATGTTCCGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAAGATACATATTTATGGGAAGATGATGATGAAAGGTACAGCGTTGAGAAAATTCCAGTTTATGACTCTGCAGAGGATGAGCCTCTCTCAAAGGTCCTTAGAAACTTGCACCCTGACATTCCTGGTATGCAAGTTAATGGGAAAATTGAACACTCAACGGATGTTGTCATAAAACCTGAACAATTATCAGAGTCAACTGCTTTTGGCATTCAGCCGCTTGGATCGGTTCCAACGAAGGGTTTACATGTCCATCCGATAAAGTCTGAGGTAGAAAGTAACGATATGAAATTGTACCCTAGAGATACTCAGCAGGCCTTTCCACAGAACAATGCAATGATATCACGAATCAGAAGTAATACTGCAGCCCGAAACTATCGCATTGGACCTAGGTCCATACCTGCCAAAAAATCAAAGAAATATAACGGAAGCATTAAAAACATCACACAGAAGCAAGTCGATGTGAAGTCTGCTGCTGAATCTTTAGCATCAAAAGAAGCACAAGAGGAGATTTTAAGATATGAGGAAATGAAGAATGAGGCAACCTGTGCTCTTGATAACTTATACAATGAAATACGACCAGCCATTGAAGAACATGAGAGGGACAGCCAAGACAGCGTATCCACGAGTGTAGCAGAGAAGTGGATTGAAGCTTGCTGTTTGAAATTGAAGGCGGAGTTTGACGTTTACTCCTCCATTGTCAAGAATTTTGCCTGCACACCTCCCAAGCCTCGTGGCCTTCCAAAACCATCTCCTCAAGTTGATAATGAAAACGAAAATAACAAGCTCTTGACGAATTGA 1488 0.4147 MDPHAEEFPQYIHITQNEFLNRRHVKQREEDIAICECKYNPSDPDSACGDGCLNVLTSSECTPGYCPCGVFCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFIIEYCGEVISWKEAKRRAQAYEIQGLKDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFATQDIPVGAELAYDYNFEWFGGAKVRCLCGAAKCSGFLGAKSRGFQEDTYLWEDDDERYSVEKIPVYDSAEDEPLSKVLRNLHPDIPGMQVNGKIEHSTDVVIKPEQLSESTAFGIQPLGSVPTKGLHVHPIKSEVESNDMKLYPRDTQQAFPQNNAMISRIRSNTAARNYRIGPRSIPAKKSKKYNGSIKNITQKQVDVKSAAESLASKEAQEEILRYEEMKNEATCALDNLYNEIRPAIEEHERDSQDSVSTSVAEKWIEACCLKLKAEFDVYSSIVKNFACTPPKPRGLPKPSPQVDNENENNKLLTN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4747g00004 495 FunFam Histone-lysine N-methyltransferase 1 235 - -
Pral4747g00004 495 PANTHER SET DOMAIN PROTEINS 8 444 - -
Pral4747g00004 495 Pfam SET domain 94 200 IPR001214 GO:0005515
Pral4747g00004 495 Coils Coil 393 420 - -
Pral4747g00004 495 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Pral4747g00004 495 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Pral4747g00004 495 SMART PostSET_3 207 223 IPR003616 -
Pral4747g00004 495 MobiDBLite consensus disorder prediction 470 495 - -
Pral4747g00004 495 SMART set_7 83 206 IPR001214 GO:0005515
Pral4747g00004 495 Gene3D SET domain 1 237 IPR046341 -
Pral4747g00004 495 SUPERFAMILY SET domain 8 220 IPR046341 -
Pral4747g00004 495 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Pral4747g00004 495 Pfam AWS domain 43 80 IPR006560 GO:0005634|GO:0042054
Pral4747g00004 495 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4747g00004 Pral-Chr4747 18851 24304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4747g00004 65 222 C2H2 Transcription Factor Family AT2G23740 34.254 4.94e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4747g00004 SET 2.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4747g00004 - - lang:109335575 781.171