LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4746g00106	ATGGGGCTGCTGAGTTATATTGCACAATGGAGAGGCATTATGAAGGAAGTGGTTGATCGCACAGCGATTACAGTGCACGGGCCTAGTATGCTCCCCACGATGAATCTCACTGGAGACGTGATTCTCGCCGAGCATGTGTCTCCTCGACTGGGGAAGCTTGGGCCTGGAGATTTGGTGCTCATTCGCTCTCCCTTAAACCCCAATCGGACTTTGACCAAGCGCATTGTGGGCTTGGAAGGGGATAGGATCACTTACTTCGATCCCAGGCATGGTGATTTGCCTCTAAATGCTGTGGTGCCAGTGGGGCATGTTTGGATTCAGGGGGATAACATCTATGCCTCCCGTGATTCACGGCATTTTGGTCCTATTCCATATGGTCTTATAGAAGGAAGAGTGTTTTTTAGGGGGCATGAATCTTACGCTAATCATTTTTTTCAATACTTCTATGGTGTTATCAGGTTTGGCCACCTCATAGTTTTGGACCGCTGGATTATTAAATGTGTTGAAGATAATAAGGAATTGTTAGTAGCTAAACTCTTGCTCTGCAATATTCTAACAGAGCTTGGGTGTTGA	573	0.4642	MGLLSYIAQWRGIMKEVVDRTAITVHGPSMLPTMNLTGDVILAEHVSPRLGKLGPGDLVLIRSPLNPNRTLTKRIVGLEGDRITYFDPRHGDLPLNAVVPVGHVWIQGDNIYASRDSRHFGPIPYGLIEGRVFFRGHESYANHFFQYFYGVIRFGHLIVLDRWIIKCVEDNKELLVAKLLLCNILTELGC	190

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4746g00106	190	Gene3D	Umud Fragment, subunit A	20	148	-	-
	Pral4746g00106	190	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	23	139	-	-
	Pral4746g00106	190	Pfam	Signal peptidase, peptidase S26	98	134	IPR019533	GO:0004252\|GO:0006465
	Pral4746g00106	190	Pfam	Signal peptidase, peptidase S26	23	86	IPR019533	GO:0004252\|GO:0006465
	Pral4746g00106	190	CDD	S26_SPase_I	24	132	IPR019533	GO:0004252\|GO:0006465
	Pral4746g00106	190	SUPERFAMILY	LexA/Signal peptidase	22	136	IPR036286	-
	Pral4746g00106	190	FunFam	Inner membrane protease subunit 1	17	144	-	-
	Pral4746g00106	190	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	99	118	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4746g00106	190	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	71	83	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4746g00106	190	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	18	34	IPR000223	GO:0006508\|GO:0008236\|GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4746g00106	Pral-Chr4746	591183	595666	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4746g00106	30	135	MADS-box Gene Family	AT1G29960	53.271	6.76e-34	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4746g00106	K09647		-	cave:132173278	198.749