LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4746g00105	ATGGGGCTGCTGAGTTATATTGCACAATGGAGAGGCATTATGAAGGAAGTGGTTGATCGCACAGCGATTACAGTGAAGTTCCTCTGCCTCCTCCACGTTACCGACAACTATCTTTGCTCCCCTAGTCACGTGCACGGGCCTAGTATGCTCCCCACGATGAATCTCACTGGAGACGTGATTCTCGCCGAGCATGTGTCTCCTCGACTGGGGAAGCTTGGGCCTGGAGATTTGGTGCTCATTCGCTCTCCCTTAAACCCCAATCGGACTTTGACCAAGCGCATTGTGGGCTTGGAAGGGGATAGGATCACTTACTTCGATCCCAGGCATGGTGATTTGCCTCTAAATGCTGTGGTGCCAGTGGGGCATGTTTGGATTCAGGGGGATAACATCTATGCCTCCCGTGATTCACGGCATTTTGGTCCTATTCCATATGGTCTTATAGAAGGAAGAGTGTTTTTTAGGGGGCATGAATCTTACGCTAATCATTTTTTTCAATACTTCTATGGTGTTATCAGGTTTGGCCACCTCATAGTTTTGGACCGCTGGATTATTAAATGTGTTGAAGATAATAAGGAATTGTTAGTAGCTAAACTCTTGCTCTGCAATATTCTAACAGAGCTTGGGTGTTGA	630	0.4698	MGLLSYIAQWRGIMKEVVDRTAITVKFLCLLHVTDNYLCSPSHVHGPSMLPTMNLTGDVILAEHVSPRLGKLGPGDLVLIRSPLNPNRTLTKRIVGLEGDRITYFDPRHGDLPLNAVVPVGHVWIQGDNIYASRDSRHFGPIPYGLIEGRVFFRGHESYANHFFQYFYGVIRFGHLIVLDRWIIKCVEDNKELLVAKLLLCNILTELGC	209

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4746g00105	209	Gene3D	Umud Fragment, subunit A	35	166	-	-
	Pral4746g00105	209	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	37	53	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4746g00105	209	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	90	102	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4746g00105	209	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Pral4746g00105	209	SUPERFAMILY	LexA/Signal peptidase	37	155	IPR036286	-
	Pral4746g00105	209	Pfam	Signal peptidase, peptidase S26	117	153	IPR019533	GO:0004252\|GO:0006465
	Pral4746g00105	209	Pfam	Signal peptidase, peptidase S26	23	105	IPR019533	GO:0004252\|GO:0006465
	Pral4746g00105	209	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	9	158	-	-
	Pral4746g00105	209	FunFam	Inner membrane protease subunit 1	35	163	-	-
	Pral4746g00105	209	CDD	S26_SPase_I	40	151	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4746g00105	Pral-Chr4746	591183	595666	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4746g00105	49	154	MADS-box Gene Family	AT1G29960	53.271	1.29e-33	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4746g00105	K09647		-	cave:132173278	243.047