Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4746g00071 ATGAAGATTCAGTGCAGTGTGTGTGAAGCTTCGGAGGCGAAGGTTTTGTGTTGCGCCGACGACGCGGCGCTGTGTTGGGAATGTGACGAGAAGGTCCATGCCGCTAACAAGCTTGCCGGCAAGCACGAGAGAGTACCTCTTTCTTCCTCTGCCTCTCACATGCCCAAATGTGATATTTGTCAGGAATCCTTTGGCTATTTCTTCTGTCTAGAGGACAGGGCTTTATTCTGCAGAAAATGTGATGTGGCAATACACACAGCAAATTCCTATGTCTCTGCTCATCAGAGGTTTCTGCTGGCTGGTATAAGAGTTGGACTTGAAGCTACTGAGCCTGGTGCTTCCTCGTCTTCTGCCAAGTCACAGTCTGAGGAGAAGATGTCAGATACAAAATCCTCTTCTGCCTGTAGAAGGGTTTCCTCAGTACCTGAGTCATCTGAACACAACGAAGTTGTACCTTGCCAAGGGGGAGGAGATGGGCAGTTTCCACCTTCTAAGGTGTCTTATGGTGGTGGCTCAACTCCTGGAAACATATCAAATTGGTCCATGGATGAATTTTTTGGTTTAAATGAATTCAGTCAGAATTACAATTGCATGAACAATGAACCATCCAAGGCTGGCAGTGGTAAGCCTGGGGATTGTGATTCTCCTGGTTTTAAATCTGGCGAAGAGGAAATGGACGAGGACGACGACGATAATGACTGTTTGGGGCGATTTTCGGATTCATCTTGGATTGTTCCTCAGATTCCTTCCCCTCCTACAGCTTCAGGATTATATTGGCCTAAAGATACTCAATATACACCTGATAATGCTATGTTAGATCATGTTCCAGACTTGTGTTTTTCTGACTCACAACAATTCATTAGAGCTCAGAATCGTCGTATTTTATCAAGGCGACGGAGGCAACCATAA 909 0.4565 MKIQCSVCEASEAKVLCCADDAALCWECDEKVHAANKLAGKHERVPLSSSASHMPKCDICQESFGYFFCLEDRALFCRKCDVAIHTANSYVSAHQRFLLAGIRVGLEATEPGASSSSAKSQSEEKMSDTKSSSACRRVSSVPESSEHNEVVPCQGGGDGQFPPSKVSYGGGSTPGNISNWSMDEFFGLNEFSQNYNCMNNEPSKAGSGKPGDCDSPGFKSGEEEMDEDDDDNDCLGRFSDSSWIVPQIPSPPTASGLYWPKDTQYTPDNAMLDHVPDLCFSDSQQFIRAQNRRILSRRRRQP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4746g00071 302 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pral4746g00071 302 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pral4746g00071 302 CDD Bbox1_BBX-like 5 47 - -
Pral4746g00071 302 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral4746g00071 302 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral4746g00071 302 MobiDBLite consensus disorder prediction 132 147 - -
Pral4746g00071 302 MobiDBLite consensus disorder prediction 201 231 - -
Pral4746g00071 302 FunFam B-box zinc finger protein 22 1 93 - -
Pral4746g00071 302 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 266 - -
Pral4746g00071 302 CDD Bbox1_BBX-like 56 99 - -
Pral4746g00071 302 Gene3D Classic Zinc Finger 1 93 - -
Pral4746g00071 302 MobiDBLite consensus disorder prediction 110 172 - -
Pral4746g00071 302 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Pral4746g00071 302 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4746g00071 Pral-Chr4746 440375 442697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4746g00071 1 300 C2C2-CO-like Transcription Factor Family AT1G78600 47.590 1.26e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral4746g00071 zf-B_box 7.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4746g00071 - - pcin:129316255 471.47