Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4746g00066 ATGGCTCTGGTCTGTGGTTCTGCGTCAGTGACGTTCCCTTCAACTTCAGCCCCATTTTTTTCTTCTAACAGGAGCTCAAATGTTCAATCCCCGTTTCTTGGGTTCCAATTGGCATTATCGAAGTCTTCCGTTCGGTCCAGTGTTCCCGTCAATTCCAGGGGAGGTCTTCAGGTTCGGTGCCAGGATCTCTCCATTGTTCCTAAAGATGAACGCTTTATGTTCGAGGAAACCGAAGTTAATGGCCCGGACATTTGGAACAAGACCTGGTATCCAAAAGCTGCAGATCATGTGAATACAGATAAACCATGGTACATTGTTGATGCTACAGACAAAATTCTCGGGAGATTAGCATCAACAATTGCTATTTACATCAGAGGGAAAAATCTGGCAACCTATACTCCCAGTGTCGACATGGGCGCCTTTGTAATTGTGGTGAATGCAGAAAAAATTGCTGTGTCTGGGAAAAAGAGGACCCAAAAGCTTTATAGGAGACATTCTGGACGACCTGGTGGTATGAAGGTGGAGACGTTTGCCCAACTACAGCAGAGGCTTCCGGAAAGGATTATTGAGCATGCTGTTCGTGGCATGCTTCCTAAAGGAAGGCTGGGAAGACAACTATTCACCCACCTAAAGGTTTATAAGGGCCCAGACCATCCACACCAGGCCCAAAAGCCCATTGAGTTGCCGATAAGGGATAAAAGAATAGAAAAGCGGAGGTAG 720 0.4639 MALVCGSASVTFPSTSAPFFSSNRSSNVQSPFLGFQLALSKSSVRSSVPVNSRGGLQVRCQDLSIVPKDERFMFEETEVNGPDIWNKTWYPKAADHVNTDKPWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQQRLPERIIEHAVRGMLPKGRLGRQLFTHLKVYKGPDHPHQAQKPIELPIRDKRIEKRR 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4746g00066 239 PANTHER RIBOSOMAL PROTEIN L13 89 235 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 CDD Ribosomal_L13 103 216 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 Hamap 50S ribosomal protein L13 [rplM]. 103 229 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 Pfam Ribosomal protein L13 102 219 IPR005822 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 SUPERFAMILY Ribosomal protein L13 97 231 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 MobiDBLite consensus disorder prediction 214 239 - -
Pral4746g00066 239 NCBIfam 50S ribosomal protein L13 97 228 IPR005823 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 ProSitePatterns Ribosomal protein L13 signature. 193 215 IPR023563 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 Gene3D Ribosomal protein L13 92 235 IPR036899 GO:0003735|GO:0005840|GO:0006412
Pral4746g00066 239 FunFam 50S ribosomal protein L13 86 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4746g00066 Pral-Chr4746 427485 429889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4746g00066 105 229 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 31.061 1.18e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4746g00066 K02871 - qsa:O6P43_001091 396.356