Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4746g00028 ATGTCTCTCATCAGAGCTTTTCGTTCTCGTAAGTTCTCCAGATCCTTTAGGGGAACTGGGGTTCTGGATGAGGACGACCGTCGGAACGGGATCGTTGCGGCCGATGGGGCTGAGGCCGGCGACGACCCAGCGTACGGCAATGCGTGGTCCACCATGCTGCCGGAGCTTCTTGGCGAAATCATACGGCGGGTGGAGGTCAGCGAGGAGCGGTGGCCCAACCGCCAAAACGTTGTTGCTTGTGCTTGCGTCTGCAAGAGGTGGAGGGAGATGACTCGTGAGATCGTACGGTCCCCTTCTCAGAGCGGCAAAATTACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGATTCACCGCACCAATGTCTTATAAGGCGAAACAAGAAGACTTCGACATTTTATCTATATCTTACCCTTACACCATCTTTCACAGATAAAGGGAAGTTTCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCTAATACTGAATATATCATATCACTTGATGATGATGACTTTTCCCAGGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGTACCAACTTCACGATCTATGACAGCCAGCCACCCCATAACGGTGCAAAGCCGTCAAGCAGCAGGGCAAGCCGAAGATTTACGAGCAAGCAGATAAGCCCACAAGTTCCTGCAGGAAACTTTGAGGCGGGACAGGTCTCATACAAGTTCAACATTTTGAAATCAAGGGGGCCAAGAAGGATGGCTTGCACAATGAAGTGCCCTTTTGCTTTGTCAGGAGAAAGTTCAGATAACAAAAATCTGGATGCCACCGATAAGACAAGCAATAAAGAACATGTTGCTTCTGGCTACTCAATATTGAAGAACAAAGCTCCAAGATGGCATGAGCATTTGCAGTGTTGGTGCTTGAATTTCCATGGCCGTGTGACCGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCCACAGTGGATCAGAGCCAACCAGACGGAAAAGGAGATGAGGAAACAGTTCTCCTCCAGTTTGGGAAAGTTGGGGATGACACTTTCACCATGGATTATAGGCAGCCATTATCAGCCTTCCAGGCTTTCGCCATTTGCCTAACAAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1140 0.4886 MSLIRAFRSRKFSRSFRGTGVLDEDDRRNGIVAADGAEAGDDPAYGNAWSTMLPELLGEIIRRVEVSEERWPNRQNVVACACVCKRWREMTREIVRSPSQSGKITFPSCLKQPGPRDSPHQCLIRRNKKTSTFYLYLTLTPSFTDKGKFLLAARRYRRGANTEYIISLDDDDFSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFTSKQISPQVPAGNFEAGQVSYKFNILKSRGPRRMACTMKCPFALSGESSDNKNLDATDKTSNKEHVASGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPDGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4746g00028 379 ProSitePatterns Tub family signature 1. 307 320 IPR018066 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 336 355 IPR000007 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 229 256 IPR000007 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 357 379 IPR000007 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 180 204 IPR000007 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 289 306 IPR000007 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 164 180 IPR000007 -
Pral4746g00028 379 PRINTS Tubby superfamily signature 307 323 IPR000007 -
Pral4746g00028 379 CDD F-box_AtTLP-like 49 93 - -
Pral4746g00028 379 MobiDBLite consensus disorder prediction 198 220 - -
Pral4746g00028 379 SUPERFAMILY Tubby C-terminal domain-like 98 379 IPR025659 -
Pral4746g00028 379 ProSitePatterns Tub family signature 2. 364 379 IPR018066 -
Pral4746g00028 379 Pfam F-box domain 54 96 IPR001810 GO:0005515
Pral4746g00028 379 Pfam Tub family 110 374 IPR000007 -
Pral4746g00028 379 Gene3D Tubby Protein; Chain A 105 379 IPR025659 -
Pral4746g00028 379 PANTHER TUBBY-RELATED 25 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4746g00028 Pral-Chr4746 128820 132265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4746g00028 1 379 TUB Transcription Factor Family AT1G53320 72.093 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pral4746g00028 Tub 1.8e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4746g00028 K19600 - qsa:O6P43_029189 627.476