Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4744g00001 ATGACACAGTTTAATGGGGTTCATCATCTACCCAATCCTGATGTTGGTGCCGCTGCATGTTCTAGCTTGTTTTATTCTGCAATTAATCCCGCCTCTGGTGCTGGTGTAGTACCTCAGCCCATTAATTACCGAGCAACTGATCAATTGCCAGCTCCAGGCACATATGCTGTCTCTGGAATTTTTATGGATGATGCAAGATGCCCATACAAACTAAAAGTTATTGAGGGCATCAGAGGAAACTACCAACATTTTAATGCTGCAGCTAGTTCTTCAGTAGCTCCTCCAAATGCAAGGCACTCTGATGGGGTTCCTGTATCATTTTCTTTACCTCAATTTAGAGGAAATCACGTTCCATCACTTGTAGAAATTGGACCTCATGGTAGTGTGTGGAGTAGATCTGGTGACTCAGTTATGGTGCATGAACACAACCATTTAATTCAAGGAAACTACTTGGGCCAGCATTTTCAACCAGCTCCACCTCCCTGGTTGGACCAGCAGTTGAACGGTACTAACAGTGAAGGACATAATATGGCCTGGAATCAGTCCCATTCAATACCTCATATGCAAGCAGCTGTTAATGGAAGTTCATTAGAAAATGCAAATACAGGTATGCAGAGATATCATGATGCAGCTAGCAACAGAAGCAGCCTCAGGTTTGCTCATCCTCCTCCTGTTAACCACCAGCACCATAATTATCAACTTCCAACTCTGCCTATGCAAGGAGTAAGGGGCCACAATATCAACTTTCACCCTCCAGTTACTGCAACTGCTTACAGAGGGGTTCCGTCAAATTCTCCGCACAGTACCATTATCCCAATGCAGAATGGTTTTGGGTTGGGTGCTAGGCACGTTGGCCCTGCAACATCAGCAAGCCAACGGGCACATCGTTCTCATAGAGGAGTCGTGCAGGATACATCTCTTAGACATCACAATTCCCGTCCAGTGAGTTTTCTCCATGTTGATGATGTTGCTTTGCTTGATGGCGTGGAAAATTTAGTTGACCATCATCATGGTGATATGCGTTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCTTTGGGCGAGAGGATTGGCAATGTGAGCACGGGTTTATCAGAGGAAACCATTACCACTCAATTGAAAACAAAAACTTTCGAGTCCTCTGCCGCTAATCCGGAGGAAGCAGCTTCTGAGGATGAAGAAACCGATTCTTGCATCATATGCCTGGACGAATATAAGAACCAAGAGACAGTGGGAATTCTCGACTGTGGGCACGAGTATCATGCCGTTTGCTTGAAGAAATGGTTGCTGCTGAAGAATGTCTGCCCCATATGCAAATCAGAGGCATTGACTCCTAGAAGGAAGGACGTATAA 1359 0.4503 MTQFNGVHHLPNPDVGAAACSSLFYSAINPASGAGVVPQPINYRATDQLPAPGTYAVSGIFMDDARCPYKLKVIEGIRGNYQHFNAAASSSVAPPNARHSDGVPVSFSLPQFRGNHVPSLVEIGPHGSVWSRSGDSVMVHEHNHLIQGNYLGQHFQPAPPPWLDQQLNGTNSEGHNMAWNQSHSIPHMQAAVNGSSLENANTGMQRYHDAASNRSSLRFAHPPPVNHQHHNYQLPTLPMQGVRGHNINFHPPVTATAYRGVPSNSPHSTIIPMQNGFGLGARHVGPATSASQRAHRSHRGVVQDTSLRHHNSRPVSFLHVDDVALLDGVENLVDHHHGDMRLDIEDMSYEELLALGERIGNVSTGLSEETITTQLKTKTFESSAANPEEAASEDEETDSCIICLDEYKNQETVGILDCGHEYHAVCLKKWLLLKNVCPICKSEALTPRRKDV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4744g00001 452 Pfam Ring finger domain 398 441 IPR001841 -
Pral4744g00001 452 CDD RING-H2_RNF24-like 398 444 - -
Pral4744g00001 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 445 IPR013083 -
Pral4744g00001 452 SMART ring_2 400 440 IPR001841 -
Pral4744g00001 452 SUPERFAMILY RING/U-box 394 447 - -
Pral4744g00001 452 ProSiteProfiles Zinc finger RING-type profile. 400 441 IPR001841 -
Pral4744g00001 452 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 71 445 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4744g00001 Pral-Chr4744 10546 13164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4744g00001 282 445 C3H Transcription Factor Family AT2G15530 41.071 1.66e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4744g00001 K19041 - qsa:O6P43_001011 503.827