Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4741g00016 ATGGCAGATGTCACCTGCCTCCGTCGCCGCGAAGCAGACGACGATCCCCAGCTTCCTGAGCAGACTCTAACTCTTGATTCTATCCCCTACTGGTCCCACGCCGATTTCGATTTCGATTTCTATCCTTCCGATCCCGAATTCCCGCCGGCCAATTCCCCCCTCCGCCCTCATAACACCCCTCGTGGCGGCGGCTTGTCTCATCAATTTGAATCCACCATCTCTCTACGAGGTGATGATAACTTCTCGGACCCTGGTTCGATTCCCAGCACCGATCTATTGGACCGCGAAAACCAGGTGAATTTCGTTATGGATCTTTTTCAGCAGCGTGTTGAGCAATCGCAGGTCATGGGTCACAGCGATTTGGTCTCCGAAGTCCTGGATAATTCTAATTTCGGCATTATTGAGGGTCATTCCGACGCGGGTGTTGATGCTTTGGGTATGGATTTCGGATTGGGCTTAGGGTTTGGCGTGGAGAGGGATTCTTTGCACGGTGATGACAATAGCGGGTTCGTGGTCGAAAATTATGGTTCTGGTGGTGGTGGTGGTGGAGATGGTGACGATTTTCTCTTCGGGAGGAGGGTTTCTGGATCTGAGTCTGTGGGGACGCCGTCCACGGCAAGCAGAATTCGGCCTTTTGACAACTGTGTACGGCTCGTAGAGTTTGGGTCAGATTCTGATGAAGAGGATGATGGGACTTTGTGCGTGCGGGCTCATTCGGAAGATGAATACAATGTGCATGACGAGAACGACGATGTTGCCGGCTTCCCTCTTTGTTGGGATTCATTACAAGTGGAGCAATACGGGGAGAATACCGAAGATTTTGAGTGGGAAGAAGTTGATGGTCGGGTTGATGAGAGGGAAGTTTTGAGCATGCTCACCGGTGAGGATGATGCGTCGGTCTCAGTTTCAGTTTCCCCAATAAATGGGCTTGAAGAAGAAGCAGCTATGAGAGCGGGAGGCGTGGAAAATTTGGGTTGGGAAGTGTTGTTGAATGCCAATAATCTGGACACGAACCCTGATTTGGATCACGATGCAGAACCTTATTTTGGTGATCATGATGACTATATTTATACTGCAGAGTACGAAATGATGTTTGGCCAGTTCGCTGACAGTGAGAATCCCTTGGTTGGTCGGCCTCCAGCTTCCGTATCGGTTGTTCAGAATCTCCCGTCAGTGATTGTGAGCAAACAAGATATCGAGAAAGATGGGGCACTTTGTGCAGTTTGTAAGGACGAGTTCAATGTTGAAGAGCAAGCGAAGCAGTTGCCATGTTCACATTTCTACCATGGAGAATGCATTGTCCCATGGTTGGGAATTCGGAATACTTGTCCTGTTTGTCGATATGAGTTGCCTACTGATGATGCTGATTATGAGCATTGGAGGATGCAAAGTTCTGGCCGTAGCCTATGA 1410 0.4943 MADVTCLRRREADDDPQLPEQTLTLDSIPYWSHADFDFDFYPSDPEFPPANSPLRPHNTPRGGGLSHQFESTISLRGDDNFSDPGSIPSTDLLDRENQVNFVMDLFQQRVEQSQVMGHSDLVSEVLDNSNFGIIEGHSDAGVDALGMDFGLGLGFGVERDSLHGDDNSGFVVENYGSGGGGGGDGDDFLFGRRVSGSESVGTPSTASRIRPFDNCVRLVEFGSDSDEEDDGTLCVRAHSEDEYNVHDENDDVAGFPLCWDSLQVEQYGENTEDFEWEEVDGRVDEREVLSMLTGEDDASVSVSVSPINGLEEEAAMRAGGVENLGWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFADSENPLVGRPPASVSVVQNLPSVIVSKQDIEKDGALCAVCKDEFNVEEQAKQLPCSHFYHGECIVPWLGIRNTCPVCRYELPTDDADYEHWRMQSSGRSL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4741g00016 469 MobiDBLite consensus disorder prediction 1 21 - -
Pral4741g00016 469 FunFam E3 ubiquitin-protein ligase RING1-like 367 453 - -
Pral4741g00016 469 ProSiteProfiles Zinc finger RING-type profile. 406 447 IPR001841 -
Pral4741g00016 469 MobiDBLite consensus disorder prediction 1 17 - -
Pral4741g00016 469 CDD RING-H2_RNF126-like 406 447 - -
Pral4741g00016 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 453 IPR013083 -
Pral4741g00016 469 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 295 451 - -
Pral4741g00016 469 MobiDBLite consensus disorder prediction 43 68 - -
Pral4741g00016 469 SMART ring_2 406 446 IPR001841 -
Pral4741g00016 469 SUPERFAMILY RING/U-box 385 453 - -
Pral4741g00016 469 Pfam Ring finger domain 406 447 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4741g00016 Pral-Chr4741 123460 125087 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4741g00016 255 453 C3H Transcription Factor Family AT5G60820 51.185 4.54e-59 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4741g00016 - - pcin:129307991 775.007