Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4740g00013 ATGGAGTCTAGGAGGTACGGTTCCGGAGATAAGGGTTTTGTGCCCAGTAATACATTTCCACCTCCTGATACGCTTGCGAGAAGCAAAAATCCCTTCCTGGGTTGGGAATTGAAAACCCAACCTAGTTTTTCCAACGACATTTTGGCCTCGGCTCAACAACATTTAGAGGGTCAAGTTTGTGAGGAAGTGGGATTTCCAGAAATGTTGGGGAAACAGTTGTCTAATGATCCGCTTGGCTGTATTATGAATGAGCCAAATTCATTTTCTGAAGGTGAAGACTCTGCTTCAAAGCTTTCAAACTCTGCGGTTGAATCTTACAGCCGGGATTCCCTCATTGATTTGAAGCTAGGACGAATTGGTGATCAAAGAGATGCCAATGAATCGCCATTTTCCAAAGGTATTCCTCTTTTGTGTTCTTCAGAGTCATCTCCGACCCCCAAGAGAGTGAGAACTTCAGGGGTTCCGTCACAAACTGCTTACTGCCAAGTATATGGTTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTCATAGTAAATGGCATAGAGCAAAGGTTTTGCCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGGAGAAAGCCACAAATGGGTACTCATCCTGGAAAGGGCAGGAGGTTGCTTCAGTCATATAGTGATAGCAGATTCCAGGGCAGCATGCTAACAAGAGCACCTTTTGTCTGCCAAGATATACTCCCTAGTATTGTTTTGCATTCTGACAAGTTTGGCACTGGTAGCTGGTGGAAACCTATAAAGGTCCAAGGTGGGAATGATTTTAGGCATATCTCTGCTATCACAAATGGGCATTCTCAATCAAGATCTTTGCTTCCTCCATATGCTGAAAAGCAATATCCGCTTCTGAATGAAACCGGTGCTATATCCACTACAGGAAGCATATTCTGTGAGAACAACAATGAGTATCCACCTGCTCTTGGAGGTGCCTATTCTGGGCCGCCATCGTCATACCAAGATACTGTCTTAGGAAGTGAAGACTTTAATGTTTTTGATACAGCATCAACCATTCAGGGATTATCGGGACTTACAGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCATTAAGCCATGCATCAGCAATTCCCGTGGGTCGCCCCATTGTTACTCCAAGCAGCCACGGCTACTACAGCCTGAGTCATGCCTCTGAAAAGATCATGGGAATAAGCTCTCAGGCATCTGCAGGTGGGATGTCAGCATCAGGTAGTTTTCCATCAGAGATAAATCAGCCTGATGGAGGCCGTCTTGGCCCTGTGTTGATATTAGACAATAATGACATTGTCAACTTAGAAATCGCAGATGGTATTTTTCAAGGGTCAGAGGTTGTGAATATGAAAGCCCGTGAAGATGGCCCCACTATTGACTTGCTTCAATTGTCATCACAGCTTCACCGAGTTGAGCACCAACGGCAATCCTTGCAGGTCATTGACACAAGAAAAAAGGAATTTCAGCAGGCGGCAGGAGCCTGTGACAGTTCTTCTGAAGAACAAAGAATGTAA 1647 0.4505 MESRRYGSGDKGFVPSNTFPPPDTLARSKNPFLGWELKTQPSFSNDILASAQQHLEGQVCEEVGFPEMLGKQLSNDPLGCIMNEPNSFSEGEDSASKLSNSAVESYSRDSLIDLKLGRIGDQRDANESPFSKGIPLLCSSESSPTPKRVRTSGVPSQTAYCQVYGCNKDLSASKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQMGTHPGKGRRLLQSYSDSRFQGSMLTRAPFVCQDILPSIVLHSDKFGTGSWWKPIKVQGGNDFRHISAITNGHSQSRSLLPPYAEKQYPLLNETGAISTTGSIFCENNNEYPPALGGAYSGPPSSYQDTVLGSEDFNVFDTASTIQGLSGLTDSGCALSLLSSQSQNSLSHASAIPVGRPIVTPSSHGYYSLSHASEKIMGISSQASAGGMSASGSFPSEINQPDGGRLGPVLILDNNDIVNLEIADGIFQGSEVVNMKAREDGPTIDLLQLSSQLHRVEHQRQSLQVIDTRKKEFQQAAGACDSSSEEQRM 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4740g00013 548 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Pral4740g00013 548 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Pral4740g00013 548 MobiDBLite consensus disorder prediction 1 26 - -
Pral4740g00013 548 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Pral4740g00013 548 Pfam SBP domain 161 234 IPR004333 GO:0003677
Pral4740g00013 548 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 530 IPR044817 GO:0003677
Pral4740g00013 548 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Pral4740g00013 548 MobiDBLite consensus disorder prediction 225 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4740g00013 Pral-Chr4740 56743 61220 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4740g00013 112 253 SBP-box Gene Family AT1G69170 59.155 5.73e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4740g00013 SBP 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4740g00013 - - gmx:100777766 612.453