Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4740g00012 ATGGAGTCTAGGAGGTACGGTTCCGGAGATAAGGGTTTTGTGCCCAGTAATACATTTCCACCTCCTGATACGCTTGCGAGAAGCAAAAATCCCTTCCTGGGTTGGGAATTGAAAACCCAACCTAGTTTTTCCAACGACATTTTGGCCTCGGCTCAACAACATTTAGAGGGTCAAGTTTGTGAGGAAGTGGGATTTCCAGAAATGTTGGGGAAACAGTTGTCTAATGATCCGCTTGGCTGTATTATGAATGAGCCAAATTCATTTTCTGAAGGTGAAGACTCTGCTTCAAAGCTTTCAAACTCTGCGGTTGAATCTTACAGCCGGGATTCCCTCATTGATTTGAAGCTAGGACGAATTGGTGATCAAAGAGATGCCAATGAATCGCCATTTTCCAAAGGTATTCCTCTTTTGTGTTCTTCAGAGTCATCTCCGACCCCCAAGAGAGTGAGAACTTCAGGGGTTCCGTCACAAACTGCTTACTGCCAAGTATATGGTTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCTAAAGTCATAGTAAATGGCATAGAGCAAAGGTTTTGCCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGTTAAGCGCAGCTGTCGCAAACGCCTTGCAGGCCATAATGAGCGTCGGAGAAAGCCACAAATGGGTACTCATCCTGGAAAGGGCAGGAGGTTGCTTCAGTCATATAGTGATAGCAGATTCCAGGGCAGCATGCTAACAAGAGCACCTTTTGTCTGCCAAGATATACTCCCTAGTATTGTTTTGCATTCTGACAAGTTTGGCACTGGTAGCTGGTGGAAACCTATAAAGGTCCAAGGTGGGAATGATTTTAGGCATATCTCTGCTATCACAAATGGGCATTCTCAATCAAGATCTTTGCTTCCTCCATATGCTGAAAAGCAATATCCGCTTCTGAATGAAACCGGTGCTATATCCACTACAGGAAGCATATTCTGTGAGAACAACAATGAGTATCCACCTGCTCTTGGAGGTGCCTATTCTGGGCCGCCATCGTCATACCAAGATACTGTCTTAGGAAGTGAAGACTTTAATGTTTTTGATACAGCATCAACCATTCAGGGATTATCGGGACTTACAGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCATTAAGCCATGCATCAGCAATTCCCGTGGGTCGCCCCATTGTTACTCCAAGCAGCCACGGCTACTACAGCCTGAGTCATGCCTCTGAAAAGATCATGGGAATAAGCTCTCAGGCATCTGCAGGTGGGATGTCAGCATCAGGTAGTTTTCCATCAGAGATAAATCAGCCTGATGGAGGCCGTCTTGGCCCTGTGTTGATATTAGACAATAATGACATTGTCAACTTAGAAATCGCAGATGGTATTTTTCAAGGGTCAGAGGTTGTGAATATGAAAGCCCGTGAAGATGGCCCCACTATTGACTTGCTTCAATTGTCATCACAGCTTCACCGAGTTGAGCACCAACGGCAATCCTTGCAGAAAAAAGGAATTTCAGCAGGCGGCAGGAGCCTGTGA 1605 0.453 MESRRYGSGDKGFVPSNTFPPPDTLARSKNPFLGWELKTQPSFSNDILASAQQHLEGQVCEEVGFPEMLGKQLSNDPLGCIMNEPNSFSEGEDSASKLSNSAVESYSRDSLIDLKLGRIGDQRDANESPFSKGIPLLCSSESSPTPKRVRTSGVPSQTAYCQVYGCNKDLSASKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQMGTHPGKGRRLLQSYSDSRFQGSMLTRAPFVCQDILPSIVLHSDKFGTGSWWKPIKVQGGNDFRHISAITNGHSQSRSLLPPYAEKQYPLLNETGAISTTGSIFCENNNEYPPALGGAYSGPPSSYQDTVLGSEDFNVFDTASTIQGLSGLTDSGCALSLLSSQSQNSLSHASAIPVGRPIVTPSSHGYYSLSHASEKIMGISSQASAGGMSASGSFPSEINQPDGGRLGPVLILDNNDIVNLEIADGIFQGSEVVNMKAREDGPTIDLLQLSSQLHRVEHQRQSLQKKGISAGGRSL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4740g00012 534 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Pral4740g00012 534 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 90 523 IPR044817 GO:0003677
Pral4740g00012 534 Coils Coil 505 525 - -
Pral4740g00012 534 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Pral4740g00012 534 Pfam SBP domain 161 234 IPR004333 GO:0003677
Pral4740g00012 534 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Pral4740g00012 534 MobiDBLite consensus disorder prediction 1 27 - -
Pral4740g00012 534 MobiDBLite consensus disorder prediction 225 246 - -
Pral4740g00012 534 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4740g00012 Pral-Chr4740 56743 61220 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4740g00012 112 253 SBP-box Gene Family AT1G69170 59.155 4.31e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4740g00012 SBP 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4740g00012 - - gmx:100777766 612.068